RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 IGKV6D-41A0A0C4DH26 115 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 FAM196BA6NMK8 535 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 TCP10L2B9ZVM9 353 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 DEXIO95424 95 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 TOP1P11387 765 aaKnown RBP12.2□□□□□ -0.46
SS18-217ENST00000580958 ATN1P54259 1190 aaPredicted RBP12.2□□□□□ -0.46
SS18-217ENST00000580958 EIF6P56537 245 aaKnown RBP12.2□□□□□ -0.46
SS18-217ENST00000580958 AKAP17AQ02040 695 aaKnown RBP12.2□□□□□ -0.46
SS18-217ENST00000580958 CSPP1Q1MSJ5 1256 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 KLHL40Q2TBA0 621 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 SRBD1Q8N5C6 995 aaKnown RBP12.2□□□□□ -0.46
SS18-217ENST00000580958 RGS22Q8NE09 1264 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 GPT2Q8TD30 523 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 ZBED3Q96IU2 234 aaPredicted RBP12.2□□□□□ -0.46
SS18-217ENST00000580958 RNF26Q9BY78 433 aaPredicted RBP12.2□□□□□ -0.46
SS18-217ENST00000580958 TRIM34Q9BYJ4 488 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 GZF1Q9H116 711 aaPredicted RBP12.2□□□□□ -0.46
SS18-217ENST00000580958 VEZTQ9HBM0 779 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 TFIP11Q9UBB9 837 aaKnown RBP12.2□□□□□ -0.46
SS18-217ENST00000580958 PI4KBQ9UBF8 816 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 MTMR7Q9Y216 660 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 GJA3Q9Y6H8 435 aa12.2□□□□□ -0.46
SS18-217ENST00000580958 CNTNAP1P78357 1384 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 KIF28PB7ZC32 967 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 FZD9O00144 591 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 MPHOSPH10O00566 681 aaKnown RBP12.19□□□□□ -0.46
SS18-217ENST00000580958 PRPF3O43395 683 aaKnown RBP12.19□□□□□ -0.46
SS18-217ENST00000580958 RPS12P25398 132 aaKnown RBP12.19□□□□□ -0.46
SS18-217ENST00000580958 KIF5BP33176 963 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 NOVP48745 357 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 GMPSP49915 693 aaPredicted RBP12.19□□□□□ -0.46
SS18-217ENST00000580958 KIF23Q02241 960 aaPredicted RBP12.19□□□□□ -0.46
SS18-217ENST00000580958 TRIM29Q14134 588 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 ARHGAP27Q6ZUM4 889 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 ILDR2Q71H61 639 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 CLEC10AQ8IUN9 316 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 FOXP4Q8IVH2 680 aaPredicted RBP12.19□□□□□ -0.46
SS18-217ENST00000580958 OTUD5Q96G74 571 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 MAP3K14Q99558 947 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 MYOZ2Q9NPC6 264 aa12.19□□□□□ -0.46
SS18-217ENST00000580958 ZNF541Q9H0D2 1346 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 hCG_1642624A0A1W2PR95 340 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 POTEB2H3BUK9 544 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 MBD3O95983 291 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 TIE1P35590 1138 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 ZNF280AP59817 542 aaPredicted RBP12.18□□□□□ -0.46
SS18-217ENST00000580958 PKN1Q16512 942 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 METTL16Q86W50 562 aaKnown RBP12.18□□□□□ -0.46
SS18-217ENST00000580958 STAG2Q8N3U4 1231 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 FAM151AQ8WW52 585 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 CCDC17Q96LX7 622 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 ZNF396Q96N95 335 aaPredicted RBP12.18□□□□□ -0.46
SS18-217ENST00000580958 BMP2KQ9NSY1 1161 aaPredicted RBP12.18□□□□□ -0.46
SS18-217ENST00000580958 MTMR4Q9NYA4 1195 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 MAD2L2Q9UI95 211 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 PCDHB13Q9Y5F0 798 aa12.18□□□□□ -0.46
SS18-217ENST00000580958 V9GY48 417 aaPredicted RBP12.18□□□□□ -0.46
SS18-217ENST00000580958 PALM3A6NDB9 673 aaPredicted RBP12.17□□□□□ -0.46
SS18-217ENST00000580958 GNAQP50148 359 aa12.17□□□□□ -0.46
SS18-217ENST00000580958 SHROOM1Q2M3G4 852 aaPredicted RBP12.17□□□□□ -0.46
SS18-217ENST00000580958 NBPF9Q3BBW0 867 aa12.17□□□□□ -0.46
SS18-217ENST00000580958 CERKLQ49MI3 558 aaPredicted RBP12.17□□□□□ -0.46
SS18-217ENST00000580958 TPRNQ4KMQ1 711 aa12.17□□□□□ -0.46
SS18-217ENST00000580958 FKBP1CQ5VVH2 108 aa12.17□□□□□ -0.46
SS18-217ENST00000580958 TATDN1Q6P1N9 297 aa12.17□□□□□ -0.46
SS18-217ENST00000580958 RASGRP2Q7LDG7 609 aa12.17□□□□□ -0.46
SS18-217ENST00000580958 BRAPQ7Z569 592 aa12.17□□□□□ -0.46
SS18-217ENST00000580958 LRRC47Q8N1G4 583 aaKnown RBP12.17□□□□□ -0.46
SS18-217ENST00000580958 LEO1Q8WVC0 666 aaPredicted RBP12.17□□□□□ -0.46
SS18-217ENST00000580958 SPATA32Q96LK8 384 aa12.17□□□□□ -0.46
SS18-217ENST00000580958 CSRNP1Q96S65 589 aa12.17□□□□□ -0.46
SS18-217ENST00000580958 SCAND2PQ9GZW5 306 aaPredicted RBP12.17□□□□□ -0.46
SS18-217ENST00000580958 RBM27Q9P2N5 1060 aaKnown RBP12.17□□□□□ -0.46
SS18-217ENST00000580958 KCNJ14Q9UNX9 436 aa12.17□□□□□ -0.46
SS18-217ENST00000580958 ELP1O95163 1332 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 USP17L5A8MUK1 530 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 WNT10BO00744 389 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 MYO1BO43795 1136 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 TTLL1O95922 423 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 MMP1P03956 469 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 PARP1P09874 1014 aaKnown RBP12.16□□□□□ -0.46
SS18-217ENST00000580958 MMP14P50281 582 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 UBE2HP62256 183 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 ATP2B2Q01814 1243 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 GNL2Q13823 731 aaKnown RBP12.16□□□□□ -0.46
SS18-217ENST00000580958 GSE1Q14687 1217 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 SLC35G1Q2M3R5 365 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 RBM26Q5T8P6 1007 aaKnown RBP12.16□□□□□ -0.46
SS18-217ENST00000580958 CAVIN1Q6NZI2 390 aaKnown RBP12.16□□□□□ -0.46
SS18-217ENST00000580958 MICALL2Q8IY33 904 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 PIBF1Q8WXW3 757 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 DPF2Q92785 391 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 SHISA4Q96DD7 197 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 USP28Q96RU2 1077 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 FTOQ9C0B1 505 aaKnown RBP eCLIP12.16□□□□□ -0.46
SS18-217ENST00000580958 VPS54Q9P1Q0 977 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 CLIP2Q9UDT6 1046 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 CNOT7Q9UIV1 285 aaKnown RBP12.16□□□□□ -0.46
SS18-217ENST00000580958 CFAP45Q9UL16 551 aa12.16□□□□□ -0.46
SS18-217ENST00000580958 TRPC6Q9Y210 931 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms