RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 AGTPBP1Q9UPW5 1226 aa18.25■□□□□ 0.51
SS18-216ENST00000580751 BTBD19C9JJ37 291 aa18.24■□□□□ 0.51
SS18-216ENST00000580751 CA12O43570 354 aa18.24■□□□□ 0.51
SS18-216ENST00000580751 NMT2O60551 498 aa18.24■□□□□ 0.51
SS18-216ENST00000580751 NOVP48745 357 aa18.24■□□□□ 0.51
SS18-216ENST00000580751 PABPC4Q13310 644 aaKnown RBP eCLIP18.24■□□□□ 0.51
SS18-216ENST00000580751 MKL1Q969V6 931 aa18.24■□□□□ 0.51
SS18-216ENST00000580751 TTC14Q96N46 770 aa18.24■□□□□ 0.51
SS18-216ENST00000580751 VCPKMTQ9H867 229 aa18.24■□□□□ 0.51
SS18-216ENST00000580751 EMILIN3Q9NT22 766 aa18.24■□□□□ 0.51
SS18-216ENST00000580751 SLC45A1Q9Y2W3 748 aa18.24■□□□□ 0.51
SS18-216ENST00000580751 MYH4Q9Y623 1939 aa18.23■□□□□ 0.51
SS18-216ENST00000580751 SART3Q15020 963 aaKnown RBP18.23■□□□□ 0.51
SS18-216ENST00000580751 RABEP1Q15276 862 aa18.23■□□□□ 0.51
SS18-216ENST00000580751 DGKHQ86XP1 1220 aa18.23■□□□□ 0.51
SS18-216ENST00000580751 MB21D2Q8IYB1 491 aaPredicted RBP18.23■□□□□ 0.51
SS18-216ENST00000580751 RASEFQ8IZ41 740 aa18.23■□□□□ 0.51
SS18-216ENST00000580751 FAM43AQ8N2R8 423 aa18.23■□□□□ 0.51
SS18-216ENST00000580751 NKX2-3Q8TAU0 364 aa18.23■□□□□ 0.51
SS18-216ENST00000580751 ZSCAN10Q96SZ4 725 aaPredicted RBP18.23■□□□□ 0.51
SS18-216ENST00000580751 TM6SF1Q9BZW5 370 aa18.23■□□□□ 0.51
SS18-216ENST00000580751 WBP1LQ9NX94 342 aa18.23■□□□□ 0.51
SS18-216ENST00000580751 SAGE1Q9NXZ1 904 aa18.23■□□□□ 0.51
SS18-216ENST00000580751 TNKSO95271 1327 aa18.23■□□□□ 0.51
SS18-216ENST00000580751 PDHXO00330 501 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 HMGB1P09429 215 aaKnown RBP18.22■□□□□ 0.51
SS18-216ENST00000580751 TOP1P11387 765 aaKnown RBP18.22■□□□□ 0.51
SS18-216ENST00000580751 VCAM1P19320 739 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 MCM5P33992 734 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 DGKZQ13574 1117 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 TREML2Q5T2D2 321 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 GPAT2Q6NUI2 795 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 CYB5R4Q7L1T6 521 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 LRRC47Q8N1G4 583 aaKnown RBP18.22■□□□□ 0.51
SS18-216ENST00000580751 GMCL1P1Q8NEA9 526 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 NEK1Q96PY6 1258 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 ZKSCAN3Q9BRR0 538 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 PNMA3Q9UL41 463 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 SNX14Q9Y5W7 946 aa18.22■□□□□ 0.51
SS18-216ENST00000580751 ERICH2A1L162 156 aa18.21■□□□□ 0.51
SS18-216ENST00000580751 WDR46O15213 610 aaKnown RBP18.21■□□□□ 0.51
SS18-216ENST00000580751 RAD21O60216 631 aa18.21■□□□□ 0.51
SS18-216ENST00000580751 PSMA5P28066 241 aa18.21■□□□□ 0.51
SS18-216ENST00000580751 TAF1CQ15572 869 aaPredicted RBP18.21■□□□□ 0.51
SS18-216ENST00000580751 RCSD1Q6JBY9 416 aa18.21■□□□□ 0.51
SS18-216ENST00000580751 PARK7Q99497 189 aaKnown RBP18.21■□□□□ 0.51
SS18-216ENST00000580751 KIF2CQ99661 725 aa18.21■□□□□ 0.51
SS18-216ENST00000580751 MTA3Q9BTC8 594 aa18.21■□□□□ 0.51
SS18-216ENST00000580751 RNF186Q9NXI6 227 aa18.21■□□□□ 0.51
SS18-216ENST00000580751 F5H6K3 240 aa18.2■□□□□ 0.5
SS18-216ENST00000580751 OSBPP22059 807 aa18.2■□□□□ 0.5
SS18-216ENST00000580751 HOXA7P31268 230 aaPredicted RBP18.2■□□□□ 0.5
SS18-216ENST00000580751 KLRC3Q07444 240 aa18.2■□□□□ 0.5
SS18-216ENST00000580751 SPICE1Q8N0Z3 855 aa18.2■□□□□ 0.5
SS18-216ENST00000580751 ENAHQ8N8S7 591 aaPredicted RBP18.2■□□□□ 0.5
SS18-216ENST00000580751 ANKS1AQ92625 1134 aa18.2■□□□□ 0.5
SS18-216ENST00000580751 TMEM47Q9BQJ4 181 aa18.2■□□□□ 0.5
SS18-216ENST00000580751 CFHR5Q9BXR6 569 aa18.2■□□□□ 0.5
SS18-216ENST00000580751 WDR19Q8NEZ3 1342 aa18.2■□□□□ 0.5
SS18-216ENST00000580751 USP17L15C9J2P7 530 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 USP17L13C9JLJ4 530 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 USP17L11C9JVI0 530 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 USP17L18D6R9N7 530 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 USP17L22D6RA61 530 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 USP17L17D6RBQ6 530 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 USP17L19D6RCP7 530 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 USP17L20D6RJB6 530 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 IFIT3O14879 490 aaKnown RBP18.19■□□□□ 0.5
SS18-216ENST00000580751 PRC1O43663 620 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 TRPA1O75762 1119 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 NDUFB10O96000 172 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 IRX3P78415 501 aaPredicted RBP18.19■□□□□ 0.5
SS18-216ENST00000580751 USP17L24Q0WX57 530 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 ADCK5Q3MIX3 580 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 IFIT1BQ5T764 474 aaKnown RBP18.19■□□□□ 0.5
SS18-216ENST00000580751 TMEM87BQ96K49 555 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 JAKMIP1Q96N16 626 aaKnown RBP18.19■□□□□ 0.5
SS18-216ENST00000580751 RPAP3Q9H6T3 665 aaPredicted RBP18.19■□□□□ 0.5
SS18-216ENST00000580751 KAT14Q9H8E8 782 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 ZFYVE28Q9HCC9 887 aa18.19■□□□□ 0.5
SS18-216ENST00000580751 ANTXR2P58335 489 aa18.18■□□□□ 0.5
SS18-216ENST00000580751 WTAPQ15007 396 aa18.18■□□□□ 0.5
SS18-216ENST00000580751 SEC23AQ15436 765 aa18.18■□□□□ 0.5
SS18-216ENST00000580751 TMEM67Q5HYA8 995 aa18.18■□□□□ 0.5
SS18-216ENST00000580751 KIAA1755Q5JYT7 1200 aa18.18■□□□□ 0.5
SS18-216ENST00000580751 SLFN13Q68D06 897 aa18.18■□□□□ 0.5
SS18-216ENST00000580751 DHX32Q7L7V1 743 aaKnown RBP18.18■□□□□ 0.5
SS18-216ENST00000580751 CHST3Q7LGC8 479 aa18.18■□□□□ 0.5
SS18-216ENST00000580751 GMCL1Q96IK5 515 aa18.18■□□□□ 0.5
SS18-216ENST00000580751 TANGO6Q9C0B7 1094 aa18.18■□□□□ 0.5
SS18-216ENST00000580751 MCM2P49736 904 aa18.17■□□□□ 0.5
SS18-216ENST00000580751 CRHR2Q13324 411 aa18.17■□□□□ 0.5
SS18-216ENST00000580751 BLOC1S2Q6QNY1 142 aa18.17■□□□□ 0.5
SS18-216ENST00000580751 CATSPERGQ6ZRH7 1159 aa18.17■□□□□ 0.5
SS18-216ENST00000580751 PNMA1Q8ND90 353 aa18.17■□□□□ 0.5
SS18-216ENST00000580751 SMCR8Q8TEV9 937 aaPredicted RBP18.17■□□□□ 0.5
SS18-216ENST00000580751 SNX21Q969T3 373 aa18.17■□□□□ 0.5
SS18-216ENST00000580751 ASCC2Q9H1I8 757 aaPredicted RBP18.17■□□□□ 0.5
SS18-216ENST00000580751 ST18O60284 1047 aa18.16■□□□□ 0.5
SS18-216ENST00000580751 HSPA1AP0DMV8 641 aaKnown RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms