RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 SYDE1Q6ZW31 735 aaPredicted RBP8.56□□□□□ -1.04
SMCHD1-202ENST00000577300 CILP2Q8IUL8 1156 aa8.56□□□□□ -1.04
SMCHD1-202ENST00000577300 FBXO15Q8NCQ5 510 aaPredicted RBP8.56□□□□□ -1.04
SMCHD1-202ENST00000577300 PDZD8Q8NEN9 1154 aa8.56□□□□□ -1.04
SMCHD1-202ENST00000577300 SP110Q9HB58 689 aa8.56□□□□□ -1.04
SMCHD1-202ENST00000577300 GREM1O60565 184 aa8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 ZGLP1P0C6A0 271 aa8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 MLECQ14165 292 aa8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 CWF19L2Q2TBE0 894 aaKnown RBP8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 KRTAP19-4Q3LI73 84 aa8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 PHACTR4Q8IZ21 702 aa8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 VWCEQ96DN2 955 aa8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 NSUN3Q9H649 340 aaKnown RBP8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 COPRSQ9NQ92 184 aa8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 SUPT16HQ9Y5B9 1047 aaKnown RBP8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 PCDHA11Q9Y5I1 949 aa8.55□□□□□ -1.04
SMCHD1-202ENST00000577300 RGS13O14921 159 aa8.54□□□□□ -1.04
SMCHD1-202ENST00000577300 LTKP29376 864 aa8.54□□□□□ -1.04
SMCHD1-202ENST00000577300 EIF4A3P38919 411 aaKnown RBP8.54□□□□□ -1.04
SMCHD1-202ENST00000577300 DIRC2Q96SL1 478 aa8.54□□□□□ -1.04
SMCHD1-202ENST00000577300 KIF2CQ99661 725 aa8.54□□□□□ -1.04
SMCHD1-202ENST00000577300 TLR3O15455 904 aaKnown RBP8.53□□□□□ -1.04
SMCHD1-202ENST00000577300 ATE1O95260 518 aa8.53□□□□□ -1.04
SMCHD1-202ENST00000577300 MRPL58Q14197 206 aaKnown RBP8.53□□□□□ -1.04
SMCHD1-202ENST00000577300 SPOCD1Q6ZMY3 1216 aa8.53□□□□□ -1.04
SMCHD1-202ENST00000577300 LILRA2Q8N149 483 aa8.53□□□□□ -1.04
SMCHD1-202ENST00000577300 DHX38Q92620 1227 aaKnown RBP8.53□□□□□ -1.04
SMCHD1-202ENST00000577300 BCL2L13Q9BXK5 485 aa8.53□□□□□ -1.04
SMCHD1-202ENST00000577300 SHISA3A0PJX4 238 aa8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 SLC22A31A6NKX4 558 aa8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 KRT1P04264 644 aa8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 GBP1P32455 592 aa8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 NR0B2Q15466 257 aa8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 ZNF326Q5BKZ1 582 aaKnown RBP8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 LCE1DQ5T752 114 aa8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 OXR1Q8N573 874 aa8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 TOX2Q96NM4 488 aa8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 EPB41L4BQ9H329 900 aa8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 BRMS1Q9HCU9 246 aa8.52□□□□□ -1.05
SMCHD1-202ENST00000577300 FITM1A5D6W6 292 aa8.51□□□□□ -1.05
SMCHD1-202ENST00000577300 ENOX1Q8TC92 643 aaKnown RBP8.51□□□□□ -1.05
SMCHD1-202ENST00000577300 SYTL4Q96C24 671 aaPredicted RBP8.51□□□□□ -1.05
SMCHD1-202ENST00000577300 DCP1AQ9NPI6 582 aaPredicted RBP8.51□□□□□ -1.05
SMCHD1-202ENST00000577300 GMIPQ9P107 970 aa8.51□□□□□ -1.05
SMCHD1-202ENST00000577300 PCDHB14Q9Y5E9 798 aa8.51□□□□□ -1.05
SMCHD1-202ENST00000577300 UBOX5O94941 541 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 TRHRP34981 398 aaPredicted RBP8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 CHMP4BP1P59074 171 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 RNF4P78317 190 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 TEKQ02763 1124 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 FBLN7Q53RD9 439 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 ARSHQ5FYA8 562 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 HS2ST1Q7LGA3 356 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 ANKLE2Q86XL3 938 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 GIPC2Q8TF65 315 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 ZNF296Q8WUU4 475 aaPredicted RBP8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 RNF32Q9H0A6 362 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 EHMT1Q9H9B1 1298 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 ZNF281Q9Y2X9 895 aa8.5□□□□□ -1.05
SMCHD1-202ENST00000577300 NFIBO00712 420 aa8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 C1QTNF9P0C862 333 aa8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 RAG1P15918 1043 aa8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 CFPP27918 469 aa8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 CLEC16AQ2KHT3 1053 aa8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 CDCP2Q5VXM1 449 aa8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 SPPL2CQ8IUH8 684 aa8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 SYTL5Q8TDW5 730 aaPredicted RBP8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 BCL11AQ9H165 835 aa8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 ASCC2Q9H1I8 757 aaPredicted RBP8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 GGT7Q9UJ14 662 aa8.49□□□□□ -1.05
SMCHD1-202ENST00000577300 CRKP46108 304 aa8.48□□□□□ -1.05
SMCHD1-202ENST00000577300 CHRNEQ04844 493 aa8.48□□□□□ -1.05
SMCHD1-202ENST00000577300 DUSP4Q13115 394 aa8.48□□□□□ -1.05
SMCHD1-202ENST00000577300 NMIQ13287 307 aaPredicted RBP8.48□□□□□ -1.05
SMCHD1-202ENST00000577300 C1QL4Q86Z23 238 aa8.48□□□□□ -1.05
SMCHD1-202ENST00000577300 SLC26A8Q96RN1 970 aa8.48□□□□□ -1.05
SMCHD1-202ENST00000577300 HDAC8Q9BY41 377 aa8.48□□□□□ -1.05
SMCHD1-202ENST00000577300 C19orf44Q9H6X5 657 aa8.48□□□□□ -1.05
SMCHD1-202ENST00000577300 CWC22Q9HCG8 908 aaKnown RBP8.48□□□□□ -1.05
SMCHD1-202ENST00000577300 ADAMTS1Q9UHI8 967 aa8.48□□□□□ -1.05
SMCHD1-202ENST00000577300 TMEM253P0C7T8 217 aa8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 MED14OSP0DP75 135 aa8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 SNX17Q15036 470 aa8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 OVOS1Q6IE37 1185 aa8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 RNF111Q6ZNA4 994 aa8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 IRF2BP1Q8IU81 584 aa8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 REXO1Q8N1G1 1221 aaKnown RBP8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 ANKS4BQ8N8V4 417 aa8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 ZSCAN18Q8TBC5 510 aaPredicted RBP8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 LINC01599Q8WXQ3 324 aa8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 SLC6A17Q9H1V8 727 aa8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 CNNM2Q9H8M5 875 aa8.47□□□□□ -1.05
SMCHD1-202ENST00000577300 GLDCP23378 1020 aa8.46□□□□□ -1.06
SMCHD1-202ENST00000577300 CCNFP41002 786 aa8.46□□□□□ -1.06
SMCHD1-202ENST00000577300 RAD51AP2Q09MP3 1159 aa8.46□□□□□ -1.06
SMCHD1-202ENST00000577300 TIGD5Q53EQ6 642 aa8.46□□□□□ -1.06
SMCHD1-202ENST00000577300 NBPF12Q5TAG4 269 aaPredicted RBP8.46□□□□□ -1.06
SMCHD1-202ENST00000577300 DAGLBQ8NCG7 672 aa8.46□□□□□ -1.06
SMCHD1-202ENST00000577300 KCNK12Q9HB15 430 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms