RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 PAK6Q9NQU5 681 aaPredicted RBP8.62□□□□□ -1.03
NUP88-213ENST00000576862 ANGEL1Q9UNK9 670 aaKnown RBP8.62□□□□□ -1.03
NUP88-213ENST00000576862 SLC5A6Q9Y289 635 aa8.62□□□□□ -1.03
NUP88-213ENST00000576862 ZYXQ15942 572 aaKnown RBP8.61□□□□□ -1.03
NUP88-213ENST00000576862 NBPF12Q5TAG4 269 aaPredicted RBP8.61□□□□□ -1.03
NUP88-213ENST00000576862 PIWIL2Q8TC59 973 aaKnown RBP8.61□□□□□ -1.03
NUP88-213ENST00000576862 SLC6A18Q96N87 628 aa8.61□□□□□ -1.03
NUP88-213ENST00000576862 FAM86C2PA6NEL3 165 aa8.6□□□□□ -1.03
NUP88-213ENST00000576862 H3BS24 57 aa8.6□□□□□ -1.03
NUP88-213ENST00000576862 CD8BP10966 210 aa8.6□□□□□ -1.03
NUP88-213ENST00000576862 GUCY2CP25092 1073 aa8.6□□□□□ -1.03
NUP88-213ENST00000576862 GP2P55259 537 aaKnown RBP8.6□□□□□ -1.03
NUP88-213ENST00000576862 FLCNQ8NFG4 579 aa8.6□□□□□ -1.03
NUP88-213ENST00000576862 CRBNQ96SW2 442 aa8.6□□□□□ -1.03
NUP88-213ENST00000576862 DUSP15Q9H1R2 295 aaPredicted RBP8.6□□□□□ -1.03
NUP88-213ENST00000576862 WASH4PA8MWX3 477 aa8.59□□□□□ -1.03
NUP88-213ENST00000576862 CLEC3AO75596 197 aa8.59□□□□□ -1.03
NUP88-213ENST00000576862 SRFP11831 508 aa8.59□□□□□ -1.03
NUP88-213ENST00000576862 GNL2Q13823 731 aaKnown RBP8.59□□□□□ -1.03
NUP88-213ENST00000576862 UNC5AQ6ZN44 842 aa8.59□□□□□ -1.03
NUP88-213ENST00000576862 VPS37DQ86XT2 251 aa8.59□□□□□ -1.03
NUP88-213ENST00000576862 FAM169BQ8N8A8 192 aa8.59□□□□□ -1.03
NUP88-213ENST00000576862 SLC43A3Q8NBI5 491 aa8.59□□□□□ -1.03
NUP88-213ENST00000576862 ASB11Q8WXH4 323 aa8.59□□□□□ -1.03
NUP88-213ENST00000576862 ZNF512BQ96KM6 892 aaPredicted RBP8.59□□□□□ -1.03
NUP88-213ENST00000576862 STRIP2Q9ULQ0 834 aa8.59□□□□□ -1.03
NUP88-213ENST00000576862 FGRP09769 529 aa8.58□□□□□ -1.04
NUP88-213ENST00000576862 THAP5Q7Z6K1 395 aa8.58□□□□□ -1.04
NUP88-213ENST00000576862 NBPF11Q86T75 865 aa8.58□□□□□ -1.04
NUP88-213ENST00000576862 OR6P1Q8NGX9 317 aa8.58□□□□□ -1.04
NUP88-213ENST00000576862 CPLX3Q8WVH0 158 aa8.58□□□□□ -1.04
NUP88-213ENST00000576862 GPR62Q9BZJ7 368 aa8.58□□□□□ -1.04
NUP88-213ENST00000576862 ATP13A1Q9HD20 1204 aa8.58□□□□□ -1.04
NUP88-213ENST00000576862 KCNH3Q9ULD8 1083 aa8.58□□□□□ -1.04
NUP88-213ENST00000576862 OAS3Q9Y6K5 1087 aaKnown RBP8.58□□□□□ -1.04
NUP88-213ENST00000576862 LTBP3Q9NS15 1303 aa8.57□□□□□ -1.04
NUP88-213ENST00000576862 ZC3H6P61129 1189 aaKnown RBP8.57□□□□□ -1.04
NUP88-213ENST00000576862 RNF4P78317 190 aa8.57□□□□□ -1.04
NUP88-213ENST00000576862 NBPF9Q3BBW0 867 aa8.57□□□□□ -1.04
NUP88-213ENST00000576862 MCF2L2Q86YR7 1114 aa8.57□□□□□ -1.04
NUP88-213ENST00000576862 UBE2FQ969M7 185 aa8.57□□□□□ -1.04
NUP88-213ENST00000576862 GMLQ99445 158 aa8.57□□□□□ -1.04
NUP88-213ENST00000576862 ZSWIM5Q9P217 1185 aa8.57□□□□□ -1.04
NUP88-213ENST00000576862 SUCOQ9UBS9 1254 aaKnown RBP8.57□□□□□ -1.04
NUP88-213ENST00000576862 A0A1W2PQH9 124 aa8.56□□□□□ -1.04
NUP88-213ENST00000576862 SHISA3A0PJX4 238 aa8.56□□□□□ -1.04
NUP88-213ENST00000576862 C9IYK1 514 aa8.56□□□□□ -1.04
NUP88-213ENST00000576862 CHMP4BP1P59074 171 aa8.56□□□□□ -1.04
NUP88-213ENST00000576862 ARID5AQ03989 594 aa8.56□□□□□ -1.04
NUP88-213ENST00000576862 XP32Q5T750 250 aa8.56□□□□□ -1.04
NUP88-213ENST00000576862 TTC6Q86TZ1 520 aa8.56□□□□□ -1.04
NUP88-213ENST00000576862 PPFIBP1Q86W92 1011 aa8.56□□□□□ -1.04
NUP88-213ENST00000576862 TP53INP2Q8IXH6 220 aa8.56□□□□□ -1.04
NUP88-213ENST00000576862 C19orf47Q8N9M1 422 aaKnown RBP8.56□□□□□ -1.04
NUP88-213ENST00000576862 ANAPC16Q96DE5 110 aa8.56□□□□□ -1.04
NUP88-213ENST00000576862 FUT4P22083 530 aa8.55□□□□□ -1.04
NUP88-213ENST00000576862 DNAJA1P31689 397 aaKnown RBP8.55□□□□□ -1.04
NUP88-213ENST00000576862 PMS1P54277 932 aaKnown RBP8.55□□□□□ -1.04
NUP88-213ENST00000576862 SNW1Q13573 536 aaKnown RBP8.55□□□□□ -1.04
NUP88-213ENST00000576862 NAALADL2Q58DX5 795 aa8.55□□□□□ -1.04
NUP88-213ENST00000576862 ABI1Q8IZP0 508 aa8.55□□□□□ -1.04
NUP88-213ENST00000576862 DHRS1Q96LJ7 313 aa8.55□□□□□ -1.04
NUP88-213ENST00000576862 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.55□□□□□ -1.04
NUP88-213ENST00000576862 MRVI1Q9Y6F6 885 aa8.55□□□□□ -1.04
NUP88-213ENST00000576862 CASP7P55210 303 aa8.54□□□□□ -1.04
NUP88-213ENST00000576862 IKZF1Q13422 519 aa8.54□□□□□ -1.04
NUP88-213ENST00000576862 GAB4Q2WGN9 574 aa8.54□□□□□ -1.04
NUP88-213ENST00000576862 ANGEL2Q5VTE6 544 aaKnown RBP8.54□□□□□ -1.04
NUP88-213ENST00000576862 NPM2Q86SE8 214 aaKnown RBP8.54□□□□□ -1.04
NUP88-213ENST00000576862 ZNF214Q9UL59 606 aaPredicted RBP8.54□□□□□ -1.04
NUP88-213ENST00000576862 SHOXO15266 292 aa8.53□□□□□ -1.04
NUP88-213ENST00000576862 ESR1P03372 595 aa8.53□□□□□ -1.04
NUP88-213ENST00000576862 SSBP05455 408 aaKnown RBP eCLIP8.53□□□□□ -1.04
NUP88-213ENST00000576862 TPP2P29144 1249 aaPredicted RBP8.53□□□□□ -1.04
NUP88-213ENST00000576862 ETFBP38117 255 aa8.53□□□□□ -1.04
NUP88-213ENST00000576862 TDRD10Q5VZ19 366 aaKnown RBP8.53□□□□□ -1.04
NUP88-213ENST00000576862 TMC3Q7Z5M5 1100 aa8.53□□□□□ -1.04
NUP88-213ENST00000576862 TSPYL5Q86VY4 417 aaPredicted RBP8.53□□□□□ -1.04
NUP88-213ENST00000576862 AGBL5Q8NDL9 886 aa8.53□□□□□ -1.04
NUP88-213ENST00000576862 C8orf37Q96NL8 207 aa8.53□□□□□ -1.04
NUP88-213ENST00000576862 PRDM14Q9GZV8 571 aa8.53□□□□□ -1.04
NUP88-213ENST00000576862 MKRN2Q9H000 416 aaKnown RBP8.53□□□□□ -1.04
NUP88-213ENST00000576862 TRIT1Q9H3H1 467 aaKnown RBP8.53□□□□□ -1.04
NUP88-213ENST00000576862 GPATCH2Q9NW75 528 aa8.53□□□□□ -1.04
NUP88-213ENST00000576862 ADAMTS6Q9UKP5 1117 aa8.53□□□□□ -1.04
NUP88-213ENST00000576862 HDAC8Q9BY41 377 aa8.52□□□□□ -1.05
NUP88-213ENST00000576862 PRDM7Q9NQW5 492 aa8.52□□□□□ -1.05
NUP88-213ENST00000576862 ZP2Q05996 745 aa8.51□□□□□ -1.05
NUP88-213ENST00000576862 NMIQ13287 307 aaPredicted RBP8.51□□□□□ -1.05
NUP88-213ENST00000576862 AUHQ13825 339 aaKnown RBP8.51□□□□□ -1.05
NUP88-213ENST00000576862 PLCL1Q15111 1095 aa8.51□□□□□ -1.05
NUP88-213ENST00000576862 AXDND1Q5T1B0 1012 aaPredicted RBP8.51□□□□□ -1.05
NUP88-213ENST00000576862 TMPRSS7Q7RTY8 843 aa8.51□□□□□ -1.05
NUP88-213ENST00000576862 ZNF408Q9H9D4 720 aa8.51□□□□□ -1.05
NUP88-213ENST00000576862 CARS2Q9HA77 564 aaKnown RBP8.51□□□□□ -1.05
NUP88-213ENST00000576862 MBNL3Q9NUK0 354 aaKnown RBP8.51□□□□□ -1.05
NUP88-213ENST00000576862 LMCD1Q9NZU5 365 aa8.51□□□□□ -1.05
NUP88-213ENST00000576862 PCDHB10Q9UN67 800 aa8.51□□□□□ -1.05
NUP88-213ENST00000576862 SLC12A7Q9Y666 1083 aa8.51□□□□□ -1.05
NUP88-213ENST00000576862 SMAD7O15105 426 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms