RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 CTDSPL2Q05D32 466 aa18.12■□□□□ 0.49
SMG6-220ENST00000576218 WDR78Q5VTH9 848 aa18.12■□□□□ 0.49
SMG6-220ENST00000576218 CATSPERGQ6ZRH7 1159 aa18.12■□□□□ 0.49
SMG6-220ENST00000576218 ZNF589Q86UQ0 364 aaPredicted RBP18.12■□□□□ 0.49
SMG6-220ENST00000576218 VCPKMTQ9H867 229 aa18.12■□□□□ 0.49
SMG6-220ENST00000576218 ISY1Q9ULR0 285 aaKnown RBP18.12■□□□□ 0.49
SMG6-220ENST00000576218 TMX2Q9Y320 296 aa18.12■□□□□ 0.49
SMG6-220ENST00000576218 TSPY2A6NKD2 308 aa18.11■□□□□ 0.49
SMG6-220ENST00000576218 CCNA1P78396 465 aa18.11■□□□□ 0.49
SMG6-220ENST00000576218 TMEM106CQ9BVX2 250 aa18.11■□□□□ 0.49
SMG6-220ENST00000576218 WDR46O15213 610 aaKnown RBP18.1■□□□□ 0.49
SMG6-220ENST00000576218 FLOT1O75955 427 aa18.1■□□□□ 0.49
SMG6-220ENST00000576218 HSPD1P10809 573 aaKnown RBP18.1■□□□□ 0.49
SMG6-220ENST00000576218 ERVK-9P63128 1117 aa18.1■□□□□ 0.49
SMG6-220ENST00000576218 ERVK-24P63145 666 aa18.1■□□□□ 0.49
SMG6-220ENST00000576218 TFAP4Q01664 338 aa18.1■□□□□ 0.49
SMG6-220ENST00000576218 FAM47AQ5JRC9 791 aa18.1■□□□□ 0.49
SMG6-220ENST00000576218 RRP12Q5JTH9 1297 aaKnown RBP18.1■□□□□ 0.49
SMG6-220ENST00000576218 CENPQQ7L2Z9 268 aaPredicted RBP18.1■□□□□ 0.49
SMG6-220ENST00000576218 SH3TC2Q8TF17 1288 aa18.1■□□□□ 0.49
SMG6-220ENST00000576218 MORF4L1Q9UBU8 362 aa18.1■□□□□ 0.49
SMG6-220ENST00000576218 RANBP6O60518 1105 aaKnown RBP18.09■□□□□ 0.49
SMG6-220ENST00000576218 GRK4P32298 578 aa18.09■□□□□ 0.49
SMG6-220ENST00000576218 COG2Q14746 738 aa18.09■□□□□ 0.49
SMG6-220ENST00000576218 ALX1Q15699 326 aa18.09■□□□□ 0.49
SMG6-220ENST00000576218 PPP4R3BQ5MIZ7 849 aa18.09■□□□□ 0.49
SMG6-220ENST00000576218 RUFY2Q8WXA3 655 aa18.09■□□□□ 0.49
SMG6-220ENST00000576218 TXNRD2Q9NNW7 524 aa18.09■□□□□ 0.49
SMG6-220ENST00000576218 HOXC10Q9NYD6 342 aa18.09■□□□□ 0.49
SMG6-220ENST00000576218 CLIP2Q9UDT6 1046 aa18.09■□□□□ 0.49
SMG6-220ENST00000576218 GABRQQ9UN88 632 aa18.09■□□□□ 0.49
SMG6-220ENST00000576218 RABGAP1Q9Y3P9 1069 aa18.09■□□□□ 0.49
SMG6-220ENST00000576218 PEX10O60683 326 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 TTLL1O95922 423 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 FGAP02671 866 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 CENPBP07199 599 aaPredicted RBP18.08■□□□□ 0.48
SMG6-220ENST00000576218 GSPT1P15170 499 aaKnown RBP18.08■□□□□ 0.48
SMG6-220ENST00000576218 MAPK4P31152 587 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 FLT3LGP49771 235 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 HAND2P61296 217 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 UBXN2AP68543 259 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 PLS1Q14651 629 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 SLAIN1Q8ND83 568 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 ARMC5Q96C12 935 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 CEP95Q96GE4 821 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 CCDC136Q96JN2 1154 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 NYAP2Q9P242 653 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 RBPJLQ9UBG7 517 aa18.08■□□□□ 0.48
SMG6-220ENST00000576218 MGAMO43451 1857 aa18.07■□□□□ 0.48
SMG6-220ENST00000576218 ZMYM6O95789 1325 aa18.07■□□□□ 0.48
SMG6-220ENST00000576218 SPDYE16A6NNV3 312 aaPredicted RBP18.07■□□□□ 0.48
SMG6-220ENST00000576218 FOXP2O15409 715 aa18.07■□□□□ 0.48
SMG6-220ENST00000576218 ADCY3O60266 1144 aa18.07■□□□□ 0.48
SMG6-220ENST00000576218 SIAH1Q8IUQ4 282 aa18.07■□□□□ 0.48
SMG6-220ENST00000576218 NEDD1Q8NHV4 660 aa18.07■□□□□ 0.48
SMG6-220ENST00000576218 STX8Q9UNK0 236 aa18.07■□□□□ 0.48
SMG6-220ENST00000576218 CTDP1Q9Y5B0 961 aaPredicted RBP18.07■□□□□ 0.48
SMG6-220ENST00000576218 IVNS1ABPQ9Y6Y0 642 aa18.07■□□□□ 0.48
SMG6-220ENST00000576218 ZNF213O14771 459 aa18.06■□□□□ 0.48
SMG6-220ENST00000576218 MLLT1Q03111 559 aaPredicted RBP18.06■□□□□ 0.48
SMG6-220ENST00000576218 KIAA1755Q5JYT7 1200 aa18.06■□□□□ 0.48
SMG6-220ENST00000576218 FAM83BQ5T0W9 1011 aa18.06■□□□□ 0.48
SMG6-220ENST00000576218 MFSD6Q6ZSS7 791 aa18.06■□□□□ 0.48
SMG6-220ENST00000576218 LRRC47Q8N1G4 583 aaKnown RBP18.06■□□□□ 0.48
SMG6-220ENST00000576218 ZNF333Q96JL9 665 aa18.06■□□□□ 0.48
SMG6-220ENST00000576218 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.06■□□□□ 0.48
SMG6-220ENST00000576218 RNF41Q9H4P4 317 aaPredicted RBP18.06■□□□□ 0.48
SMG6-220ENST00000576218 MTMR4Q9NYA4 1195 aa18.06■□□□□ 0.48
SMG6-220ENST00000576218 ANAPC4Q9UJX5 808 aa18.06■□□□□ 0.48
SMG6-220ENST00000576218 PLEKHH3Q7Z736 793 aa18.05■□□□□ 0.48
SMG6-220ENST00000576218 MB21D1Q8N884 522 aa18.05■□□□□ 0.48
SMG6-220ENST00000576218 SOCS4Q8WXH5 440 aa18.05■□□□□ 0.48
SMG6-220ENST00000576218 NUDT12Q9BQG2 462 aa18.05■□□□□ 0.48
SMG6-220ENST00000576218 CTNNA3Q9UI47 895 aa18.05■□□□□ 0.48
SMG6-220ENST00000576218 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.05■□□□□ 0.48
SMG6-220ENST00000576218 PLIN4Q96Q06 1357 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 RAD50Q92878 1312 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 F5H6K3 240 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 ELNP15502 786 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 DSG3P32926 999 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 KLRC3Q07444 240 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 IKQ13123 557 aaPredicted RBP18.04■□□□□ 0.48
SMG6-220ENST00000576218 IMMTQ16891 758 aaKnown RBP18.04■□□□□ 0.48
SMG6-220ENST00000576218 Q3C1V9 767 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 LBX2Q6XYB7 198 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 GPR142Q7Z601 462 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 ATG4CQ96DT6 458 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 PORCNQ9H237 461 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 INCENPQ9NQS7 918 aa18.04■□□□□ 0.48
SMG6-220ENST00000576218 IGKV6D-41A0A0C4DH26 115 aa18.03■□□□□ 0.48
SMG6-220ENST00000576218 ORC4O43929 436 aa18.03■□□□□ 0.48
SMG6-220ENST00000576218 NDUFB10O96000 172 aa18.03■□□□□ 0.48
SMG6-220ENST00000576218 PCP11498 1178 aaKnown RBP18.03■□□□□ 0.48
SMG6-220ENST00000576218 IRF5Q13568 498 aa18.03■□□□□ 0.48
SMG6-220ENST00000576218 AKNAD1Q5T1N1 836 aa18.03■□□□□ 0.48
SMG6-220ENST00000576218 NUP88Q99567 741 aaPredicted RBP18.03■□□□□ 0.48
SMG6-220ENST00000576218 DSCC1Q9BVC3 393 aa18.03■□□□□ 0.48
SMG6-220ENST00000576218 BTBD7Q9P203 1132 aa18.03■□□□□ 0.48
SMG6-220ENST00000576218 MTMR7Q9Y216 660 aa18.03■□□□□ 0.48
SMG6-220ENST00000576218 GREB1LQ9C091 1923 aaPredicted RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms