RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 PI16Q6UXB8 463 aa8.25□□□□□ -1.09
VPS53-217ENST00000575100 NOC4LQ9BVI4 516 aaKnown RBP8.25□□□□□ -1.09
VPS53-217ENST00000575100 RTFDC1Q9BY42 306 aaPredicted RBP8.25□□□□□ -1.09
VPS53-217ENST00000575100 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS53-217ENST00000575100 LRFN2Q9ULH4 789 aa8.25□□□□□ -1.09
VPS53-217ENST00000575100 UBR2Q8IWV8 1755 aa8.25□□□□□ -1.09
VPS53-217ENST00000575100 A0A0G2JLW4 131 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 KATNA1O75449 491 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 ANXA1P04083 346 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 IFIT2P09913 472 aaKnown RBP8.24□□□□□ -1.09
VPS53-217ENST00000575100 USP17L7P0C7H9 530 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 RLBP1P12271 317 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 DPEP1P16444 411 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 EIF2S2P20042 333 aaKnown RBP8.24□□□□□ -1.09
VPS53-217ENST00000575100 KCNA3P22001 575 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 PIN1Q13526 163 aaPredicted RBP8.24□□□□□ -1.09
VPS53-217ENST00000575100 PTPRNQ16849 979 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 ALDH1L2Q3SY69 923 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 FAM102BQ5T8I3 360 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 IER5LQ5T953 404 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 G2E3Q7L622 706 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 DNAJC5GQ8N7S2 189 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 CCDC89Q8N998 374 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 CPLX3Q8WVH0 158 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 NINJ1Q92982 152 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 CHMP4BQ9H444 224 aaKnown RBP8.24□□□□□ -1.09
VPS53-217ENST00000575100 NOB1Q9ULX3 412 aaKnown RBP8.24□□□□□ -1.09
VPS53-217ENST00000575100 MAPK8IP1Q9UQF2 711 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 BCS1LQ9Y276 419 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 USP16Q9Y5T5 823 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 POTEFA5A3E0 1075 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 PDGFAP04085 211 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 HTR3AP46098 478 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 PIP4K2AP48426 406 aaPredicted RBP8.24□□□□□ -1.09
VPS53-217ENST00000575100 PURAQ00577 322 aaKnown RBP8.24□□□□□ -1.09
VPS53-217ENST00000575100 PROSER3Q2NL68 480 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 CCDC93Q567U6 631 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 PCNX4Q63HM2 1172 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 NIM1KQ8IY84 436 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 SMAP1Q8IYB5 467 aaPredicted RBP8.24□□□□□ -1.09
VPS53-217ENST00000575100 TTC5Q8N0Z6 440 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 AFAP1L2Q8N4X5 818 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 FAM169BQ8N8A8 192 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 PANK1Q8TE04 598 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 ST7Q9NRC1 585 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 DAAM1Q9Y4D1 1078 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 PARP3Q9Y6F1 533 aa8.24□□□□□ -1.09
VPS53-217ENST00000575100 GOLGB1Q14789 3259 aaKnown RBP8.23□□□□□ -1.09
VPS53-217ENST00000575100 A0A1W2PRU2 124 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 TMEM229AB2RXF0 380 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 PRRT4C9JH25 899 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 ATMINO43313 823 aaPredicted RBP8.23□□□□□ -1.09
VPS53-217ENST00000575100 PRPF3O43395 683 aaKnown RBP8.23□□□□□ -1.09
VPS53-217ENST00000575100 TRIM27P14373 513 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 RFC4P35249 363 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 SOX5P35711 763 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 EPHA4P54764 986 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 DNM1Q05193 864 aaKnown RBP8.23□□□□□ -1.09
VPS53-217ENST00000575100 MLC1Q15049 377 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 Q3C1V9 767 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 AXDND1Q5T1B0 1012 aaPredicted RBP8.23□□□□□ -1.09
VPS53-217ENST00000575100 C1orf53Q5VUE5 145 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 DZIP3Q86Y13 1208 aaKnown RBP8.23□□□□□ -1.09
VPS53-217ENST00000575100 MAGEB6Q8N7X4 407 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 ARMC2Q8NEN0 867 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 ARHGAP9Q9BRR9 750 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 NT5C1AQ9BXI3 368 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 NBPF3Q9H094 633 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 TSPAN10Q9H1Z9 355 aaPredicted RBP8.23□□□□□ -1.09
VPS53-217ENST00000575100 USP42Q9H9J4 1324 aaKnown RBP8.23□□□□□ -1.09
VPS53-217ENST00000575100 SLC27A5Q9Y2P5 690 aa8.23□□□□□ -1.09
VPS53-217ENST00000575100 DYTNA2CJ06 578 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 CFHP08603 1231 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 EIF4A3P38919 411 aaKnown RBP8.22□□□□□ -1.09
VPS53-217ENST00000575100 C21orf62-AS1Q17RA5 79 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 MTERF2Q49AM1 385 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 CT47A1Q5JQC4 288 aaPredicted RBP8.22□□□□□ -1.09
VPS53-217ENST00000575100 MORN1Q5T089 497 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 USPL1Q5W0Q7 1092 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 ARHGAP27Q6ZUM4 889 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 TTC30BQ8N4P2 665 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 EXOC6Q8TAG9 804 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 SNRNP27Q8WVK2 155 aaKnown RBP8.22□□□□□ -1.09
VPS53-217ENST00000575100 SLC39A7Q92504 469 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 ERP27Q96DN0 273 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 FMNL2Q96PY5 1086 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 PHAXQ9H814 394 aaKnown RBP8.22□□□□□ -1.09
VPS53-217ENST00000575100 NMRK2Q9NPI5 230 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 KCNQ5Q9NR82 932 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 CCDC88AQ3V6T2 1871 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 GOLGA6CA6NDK9 693 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 GOLGA6BA6NDN3 693 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 POTECB2RU33 542 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 PDE8AO60658 829 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 GOLGA6DP0CG33 693 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 CRKLP46109 303 aaKnown RBP8.22□□□□□ -1.09
VPS53-217ENST00000575100 DDR1Q08345 913 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 APOBRQ0VD83 1088 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 LONRF1Q17RB8 773 aa8.22□□□□□ -1.09
VPS53-217ENST00000575100 CCDC96Q2M329 555 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms