RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 ST14Q9Y5Y6 855 aa7.56□□□□□ -1.2
NUP88-208ENST00000574087 SLC12A7Q9Y666 1083 aa7.56□□□□□ -1.2
NUP88-208ENST00000574087 FAM86C2PA6NEL3 165 aa7.55□□□□□ -1.2
NUP88-208ENST00000574087 SMAD7O15105 426 aaKnown RBP7.55□□□□□ -1.2
NUP88-208ENST00000574087 PRNPP04156 253 aa7.55□□□□□ -1.2
NUP88-208ENST00000574087 DTWD2Q8NBA8 298 aa7.55□□□□□ -1.2
NUP88-208ENST00000574087 PIWIL2Q8TC59 973 aaKnown RBP7.55□□□□□ -1.2
NUP88-208ENST00000574087 DHRS1Q96LJ7 313 aa7.55□□□□□ -1.2
NUP88-208ENST00000574087 TMEM265A0A087WTH1 108 aa7.54□□□□□ -1.2
NUP88-208ENST00000574087 CLCN7P51798 805 aa7.54□□□□□ -1.2
NUP88-208ENST00000574087 PMS1P54277 932 aaKnown RBP7.54□□□□□ -1.2
NUP88-208ENST00000574087 CHMP4BP1P59074 171 aa7.54□□□□□ -1.2
NUP88-208ENST00000574087 RNF4P78317 190 aa7.54□□□□□ -1.2
NUP88-208ENST00000574087 LRP8Q14114 963 aa7.54□□□□□ -1.2
NUP88-208ENST00000574087 BSDC1Q9NW68 430 aaPredicted RBP7.54□□□□□ -1.2
NUP88-208ENST00000574087 FAM155AB1AL88 458 aaPredicted RBP7.53□□□□□ -1.2
NUP88-208ENST00000574087 PRKCQQ04759 706 aa7.53□□□□□ -1.2
NUP88-208ENST00000574087 PPP2R5EQ16537 467 aa7.53□□□□□ -1.2
NUP88-208ENST00000574087 TNNI3KQ59H18 835 aa7.53□□□□□ -1.2
NUP88-208ENST00000574087 PPFIBP1Q86W92 1011 aa7.53□□□□□ -1.2
NUP88-208ENST00000574087 ZNF512BQ96KM6 892 aaPredicted RBP7.53□□□□□ -1.2
NUP88-208ENST00000574087 VAV3Q9UKW4 847 aa7.53□□□□□ -1.2
NUP88-208ENST00000574087 ZNF214Q9UL59 606 aaPredicted RBP7.53□□□□□ -1.2
NUP88-208ENST00000574087 KCNH3Q9ULD8 1083 aa7.53□□□□□ -1.2
NUP88-208ENST00000574087 C9IYK1 514 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 HYAL3O43820 417 aaPredicted RBP7.52□□□□□ -1.21
NUP88-208ENST00000574087 SRFP11831 508 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 ATP2B1P20020 1258 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 SF3A1Q15459 793 aaKnown RBP7.52□□□□□ -1.21
NUP88-208ENST00000574087 NBPF9Q3BBW0 867 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 NFXL1Q6ZNB6 911 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 MISP3Q96FF7 219 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 HSPA12BQ96MM6 686 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 GPR62Q9BZJ7 368 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 DUSP15Q9H1R2 295 aaPredicted RBP7.52□□□□□ -1.21
NUP88-208ENST00000574087 PHAXQ9H814 394 aaKnown RBP7.52□□□□□ -1.21
NUP88-208ENST00000574087 SEMA3GQ9NS98 782 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 CCDC39Q9UFE4 941 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 PITPNM2Q9BZ72 1349 aa7.52□□□□□ -1.21
NUP88-208ENST00000574087 ARTNQ5T4W7 220 aa7.51□□□□□ -1.21
NUP88-208ENST00000574087 CDKAL1Q5VV42 579 aa7.51□□□□□ -1.21
NUP88-208ENST00000574087 WFDC3Q8IUB2 231 aa7.51□□□□□ -1.21
NUP88-208ENST00000574087 BCL7CQ8WUZ0 217 aaPredicted RBP7.51□□□□□ -1.21
NUP88-208ENST00000574087 SREK1Q8WXA9 508 aaKnown RBP7.51□□□□□ -1.21
NUP88-208ENST00000574087 SMARCC1Q92922 1105 aaPredicted RBP7.51□□□□□ -1.21
NUP88-208ENST00000574087 ARMC5Q96C12 935 aa7.51□□□□□ -1.21
NUP88-208ENST00000574087 HRASLS5Q96KN8 279 aa7.51□□□□□ -1.21
NUP88-208ENST00000574087 PCMTD2Q9NV79 361 aa7.51□□□□□ -1.21
NUP88-208ENST00000574087 ACTR10Q9NZ32 417 aa7.51□□□□□ -1.21
NUP88-208ENST00000574087 KLF4O43474 513 aa7.5□□□□□ -1.21
NUP88-208ENST00000574087 ADAMTS4O75173 837 aa7.5□□□□□ -1.21
NUP88-208ENST00000574087 AOC3Q16853 763 aa7.5□□□□□ -1.21
NUP88-208ENST00000574087 BBS9Q3SYG4 887 aa7.5□□□□□ -1.21
NUP88-208ENST00000574087 ANKRD39Q53RE8 183 aa7.5□□□□□ -1.21
NUP88-208ENST00000574087 TDRD10Q5VZ19 366 aaKnown RBP7.5□□□□□ -1.21
NUP88-208ENST00000574087 ANKS3Q6ZW76 656 aa7.5□□□□□ -1.21
NUP88-208ENST00000574087 THAP5Q7Z6K1 395 aa7.5□□□□□ -1.21
NUP88-208ENST00000574087 VSIG10LQ86VR7 867 aa7.5□□□□□ -1.21
NUP88-208ENST00000574087 STK11IPQ8N1F8 1099 aa7.5□□□□□ -1.21
NUP88-208ENST00000574087 KLHL6Q8WZ60 621 aa7.5□□□□□ -1.21
NUP88-208ENST00000574087 MKRN2Q9H000 416 aaKnown RBP7.5□□□□□ -1.21
NUP88-208ENST00000574087 H3BS24 57 aa7.49□□□□□ -1.21
NUP88-208ENST00000574087 SHOXO15266 292 aa7.49□□□□□ -1.21
NUP88-208ENST00000574087 STK10O94804 968 aaKnown RBP7.49□□□□□ -1.21
NUP88-208ENST00000574087 BNIP3Q12983 259 aa7.49□□□□□ -1.21
NUP88-208ENST00000574087 SNW1Q13573 536 aaKnown RBP7.49□□□□□ -1.21
NUP88-208ENST00000574087 AUHQ13825 339 aaKnown RBP7.49□□□□□ -1.21
NUP88-208ENST00000574087 AXDND1Q5T1B0 1012 aaPredicted RBP7.49□□□□□ -1.21
NUP88-208ENST00000574087 CCDC144CPQ8IYA2 1237 aa7.49□□□□□ -1.21
NUP88-208ENST00000574087 HNRNPLLQ8WVV9 542 aaKnown RBP7.49□□□□□ -1.21
NUP88-208ENST00000574087 PCDHB10Q9UN67 800 aa7.49□□□□□ -1.21
NUP88-208ENST00000574087 SCO2A0A1W2PP80 73 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 SHISA3A0PJX4 238 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 TP53P04637 393 aaPredicted RBP7.48□□□□□ -1.21
NUP88-208ENST00000574087 GTF2F1P35269 517 aaKnown RBP eCLIP7.48□□□□□ -1.21
NUP88-208ENST00000574087 SLC7A5Q01650 507 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 RBL2Q08999 1139 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 GNPTABQ3T906 1256 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 SPRED2Q7Z698 418 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 C7orf61Q8IZ16 206 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 ASB11Q8WXH4 323 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 DHX38Q92620 1227 aaKnown RBP7.48□□□□□ -1.21
NUP88-208ENST00000574087 UBE2FQ969M7 185 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 PRDM14Q9GZV8 571 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 ZSWIM5Q9P217 1185 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 SLC5A6Q9Y289 635 aa7.48□□□□□ -1.21
NUP88-208ENST00000574087 WASH4PA8MWX3 477 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 CD8BP10966 210 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 CD96P40200 585 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 NMIQ13287 307 aaPredicted RBP7.47□□□□□ -1.21
NUP88-208ENST00000574087 GAB4Q2WGN9 574 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 DCAF15Q66K64 600 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 VHLLQ6RSH7 139 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 ZNF574Q6ZN55 896 aaPredicted RBP7.47□□□□□ -1.21
NUP88-208ENST00000574087 TMC3Q7Z5M5 1100 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 TSPYL5Q86VY4 417 aaPredicted RBP7.47□□□□□ -1.21
NUP88-208ENST00000574087 ENOX1Q8TC92 643 aaKnown RBP7.47□□□□□ -1.21
NUP88-208ENST00000574087 MICAL1Q8TDZ2 1067 aa7.47□□□□□ -1.21
NUP88-208ENST00000574087 TRIT1Q9H3H1 467 aaKnown RBP7.47□□□□□ -1.21
NUP88-208ENST00000574087 ATP13A1Q9HD20 1204 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms