RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 APOA5Q6Q788 366 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 VEZTQ9HBM0 779 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 GTPBP6O43824 516 aaPredicted RBP17.09■□□□□ 0.33
CIITA-204ENST00000570546 RRAGAQ7L523 313 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 REXO1Q8N1G1 1221 aaKnown RBP17.09■□□□□ 0.33
CIITA-204ENST00000570546 MED14O60244 1454 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 STX10O60499 249 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 FMNL1O95466 1100 aaPredicted RBP17.09■□□□□ 0.33
CIITA-204ENST00000570546 KIF23Q02241 960 aaPredicted RBP17.09■□□□□ 0.33
CIITA-204ENST00000570546 C6orf163Q5TEZ5 329 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 NELFCDQ8IXH7 590 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 RPGRIP1Q96KN7 1286 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 SMCO2A6NFE2 343 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 NDUFAB1O14561 156 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 PDE8BO95263 885 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 GYG1P46976 350 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 CFAP221Q4G0U5 840 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 SND1Q7KZF4 910 aaKnown RBP eCLIP17.09■□□□□ 0.33
CIITA-204ENST00000570546 PPP1R14CQ8TAE6 165 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 UTP11Q9Y3A2 253 aaKnown RBP17.09■□□□□ 0.33
CIITA-204ENST00000570546 LRRC7Q96NW7 1537 aa17.09■□□□□ 0.33
CIITA-204ENST00000570546 DDAH1O94760 285 aa17.08■□□□□ 0.33
CIITA-204ENST00000570546 SCG2P13521 617 aa17.08■□□□□ 0.33
CIITA-204ENST00000570546 KLHL30Q0D2K2 578 aa17.08■□□□□ 0.33
CIITA-204ENST00000570546 IQCGQ9H095 443 aaKnown RBP17.08■□□□□ 0.33
CIITA-204ENST00000570546 KCNK9Q9NPC2 374 aa17.08■□□□□ 0.33
CIITA-204ENST00000570546 BIN2Q9UBW5 565 aaPredicted RBP17.08■□□□□ 0.33
CIITA-204ENST00000570546 CCNL1Q9UK58 526 aaPredicted RBP17.08■□□□□ 0.33
CIITA-204ENST00000570546 C2CD5Q86YS7 1000 aa17.08■□□□□ 0.33
CIITA-204ENST00000570546 CSRNP2Q9H175 543 aa17.08■□□□□ 0.33
CIITA-204ENST00000570546 PAK2Q13177 524 aa17.08■□□□□ 0.32
CIITA-204ENST00000570546 KAT6BQ8WYB5 2073 aa17.08■□□□□ 0.32
CIITA-204ENST00000570546 TTLL12Q14166 644 aaPredicted RBP17.08■□□□□ 0.32
CIITA-204ENST00000570546 KLHL7Q8IXQ5 586 aa17.08■□□□□ 0.32
CIITA-204ENST00000570546 STK24Q9Y6E0 443 aa17.08■□□□□ 0.32
CIITA-204ENST00000570546 PLCB3Q01970 1234 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 CCDC24Q8N4L8 307 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 FOXP1Q9H334 677 aaPredicted RBP17.07■□□□□ 0.32
CIITA-204ENST00000570546 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.07■□□□□ 0.32
CIITA-204ENST00000570546 PKD2L1Q9P0L9 805 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 A6NNZ2 444 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 H7C1D1 291 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 CEP104O60308 925 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 RPN1P04843 607 aaKnown RBP17.07■□□□□ 0.32
CIITA-204ENST00000570546 TUBB8Q3ZCM7 444 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 FERMT1Q9BQL6 677 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 CEP57Q86XR8 500 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 FBF1Q8TES7 1133 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 MPHOSPH6Q99547 160 aaKnown RBP17.07■□□□□ 0.32
CIITA-204ENST00000570546 NUCKS1Q9H1E3 243 aaKnown RBP17.07■□□□□ 0.32
CIITA-204ENST00000570546 GOLGA8FQ08AF8 430 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 GOLGA8DPQ0D2H9 430 aa17.07■□□□□ 0.32
CIITA-204ENST00000570546 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.07■□□□□ 0.32
CIITA-204ENST00000570546 DNM2P50570 870 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 LRRC45Q96CN5 670 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 SPOPO43791 374 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 INF2Q27J81 1249 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 CLEC17AQ6ZS10 378 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 OSBP2Q969R2 916 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 TCHPQ9BT92 498 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 DNM3Q9UQ16 869 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 PARP3Q9Y6F1 533 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 E9PCH4 1651 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 STAMBPO95630 424 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 RAD51AP2Q09MP3 1159 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 PTGDRQ13258 359 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 UIMC1Q96RL1 719 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 ARAP3Q8WWN8 1544 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 ADD2P35612 726 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 CHRNDQ07001 517 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 TRIM58Q8NG06 486 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 SETBP1Q9Y6X0 1596 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 PPFIA1Q13136 1202 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 GPKOWQ92917 476 aaPredicted RBP eCLIP17.06■□□□□ 0.32
CIITA-204ENST00000570546 GDAP1L1Q96MZ0 367 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 KIF2CQ99661 725 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 RABEP2Q9H5N1 569 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 NLRC4Q9NPP4 1024 aa17.06■□□□□ 0.32
CIITA-204ENST00000570546 ACTN4O43707 911 aaKnown RBP17.05■□□□□ 0.32
CIITA-204ENST00000570546 KRT5P13647 590 aa17.05■□□□□ 0.32
CIITA-204ENST00000570546 RPS6KA1Q15418 735 aa17.05■□□□□ 0.32
CIITA-204ENST00000570546 ATG3Q9NT62 314 aa17.05■□□□□ 0.32
CIITA-204ENST00000570546 PNPLA6Q8IY17 1366 aa17.05■□□□□ 0.32
CIITA-204ENST00000570546 TECP42680 631 aa17.05■□□□□ 0.32
CIITA-204ENST00000570546 RPS8P62241 208 aaKnown RBP17.05■□□□□ 0.32
CIITA-204ENST00000570546 TOB2Q14106 344 aaPredicted RBP17.05■□□□□ 0.32
CIITA-204ENST00000570546 KIFAP3Q92845 792 aa17.05■□□□□ 0.32
CIITA-204ENST00000570546 PUS7LQ9H0K6 701 aaKnown RBP17.05■□□□□ 0.32
CIITA-204ENST00000570546 ERCC6L2Q5T890 1561 aa17.05■□□□□ 0.32
CIITA-204ENST00000570546 ARHGAP31Q2M1Z3 1444 aa17.05■□□□□ 0.32
CIITA-204ENST00000570546 TOM1O60784 492 aa17.05■□□□□ 0.32
CIITA-204ENST00000570546 LSM14BQ9BX40 385 aaKnown RBP17.05■□□□□ 0.32
CIITA-204ENST00000570546 UBL4BQ8N7F7 174 aa17.05■□□□□ 0.32
CIITA-204ENST00000570546 SH2B2O14492 632 aaPredicted RBP17.04■□□□□ 0.32
CIITA-204ENST00000570546 ERCC5P28715 1186 aaPredicted RBP17.04■□□□□ 0.32
CIITA-204ENST00000570546 LONP1P36776 959 aaKnown RBP17.04■□□□□ 0.32
CIITA-204ENST00000570546 SLC1A4P43007 532 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 COPB1P53618 953 aaKnown RBP17.04■□□□□ 0.32
CIITA-204ENST00000570546 PNMA1Q8ND90 353 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 FLOT1O75955 427 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms