RNA–Protein interactions for RNA: ENST00000568477.5

CMTM3-215, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-215ENST00000568477 ROBO3Q96MS0 1386 aa17.27■□□□□ 0.35
CMTM3-215ENST00000568477 CNMDO75829 334 aa17.26■□□□□ 0.35
CMTM3-215ENST00000568477 ATP2B2Q01814 1243 aa17.26■□□□□ 0.35
CMTM3-215ENST00000568477 ZMYM1Q5SVZ6 1142 aa17.26■□□□□ 0.35
CMTM3-215ENST00000568477 GPR142Q7Z601 462 aa17.26■□□□□ 0.35
CMTM3-215ENST00000568477 SIAH1Q8IUQ4 282 aa17.26■□□□□ 0.35
CMTM3-215ENST00000568477 U2AF1L4Q8WU68 220 aaKnown RBP17.26■□□□□ 0.35
CMTM3-215ENST00000568477 NACAP1Q9BZK3 213 aa17.26■□□□□ 0.35
CMTM3-215ENST00000568477 RWDD1Q9H446 243 aaPredicted RBP17.26■□□□□ 0.35
CMTM3-215ENST00000568477 VCPKMTQ9H867 229 aa17.26■□□□□ 0.35
CMTM3-215ENST00000568477 MKNK2Q9HBH9 465 aa17.26■□□□□ 0.35
CMTM3-215ENST00000568477 HOXC10Q9NYD6 342 aa17.26■□□□□ 0.35
CMTM3-215ENST00000568477 STAP2Q9UGK3 403 aa17.26■□□□□ 0.35
CMTM3-215ENST00000568477 MKI67P46013 3256 aaKnown RBP17.26■□□□□ 0.35
CMTM3-215ENST00000568477 CEP290O15078 2479 aa17.25■□□□□ 0.35
CMTM3-215ENST00000568477 PATL2C9JE40 543 aaKnown RBP17.25■□□□□ 0.35
CMTM3-215ENST00000568477 EEF2P13639 858 aaKnown RBP17.25■□□□□ 0.35
CMTM3-215ENST00000568477 CYP2B6P20813 491 aa17.25■□□□□ 0.35
CMTM3-215ENST00000568477 PDE1AP54750 535 aa17.25■□□□□ 0.35
CMTM3-215ENST00000568477 COG2Q14746 738 aa17.25■□□□□ 0.35
CMTM3-215ENST00000568477 KIAA1755Q5JYT7 1200 aa17.25■□□□□ 0.35
CMTM3-215ENST00000568477 STK11IPQ8N1F8 1099 aa17.25■□□□□ 0.35
CMTM3-215ENST00000568477 SEC62Q99442 399 aaKnown RBP17.25■□□□□ 0.35
CMTM3-215ENST00000568477 BTBD7Q9P203 1132 aa17.25■□□□□ 0.35
CMTM3-215ENST00000568477 PLXNB2O15031 1838 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 WDR46O15213 610 aaKnown RBP17.24■□□□□ 0.35
CMTM3-215ENST00000568477 SGPL1O95470 568 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 XRCC5P13010 732 aaKnown RBP17.24■□□□□ 0.35
CMTM3-215ENST00000568477 CAPN2P17655 700 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 RASA1P20936 1047 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 RGS2P41220 211 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 WDR78Q5VTH9 848 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 TRMT44Q8IYL2 757 aaKnown RBP17.24■□□□□ 0.35
CMTM3-215ENST00000568477 IFNL3Q8IZI9 196 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 SPICE1Q8N0Z3 855 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 EXOC6Q8TAG9 804 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 TRIB2Q92519 343 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 EVI5LQ96CN4 794 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 DEFB118Q96PH6 123 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 LNPKQ9C0E8 428 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.24■□□□□ 0.353e-10■■■■■ 57.7
CMTM3-215ENST00000568477 ZNF287Q9HBT7 754 aa17.24■□□□□ 0.35
CMTM3-215ENST00000568477 PAK6Q9NQU5 681 aaPredicted RBP17.24■□□□□ 0.35
CMTM3-215ENST00000568477 FLOT1O75955 427 aa17.23■□□□□ 0.35
CMTM3-215ENST00000568477 ZKSCAN1P17029 563 aaPredicted RBP17.23■□□□□ 0.35
CMTM3-215ENST00000568477 MORN1Q5T089 497 aa17.23■□□□□ 0.35
CMTM3-215ENST00000568477 SMC5Q8IY18 1101 aa17.23■□□□□ 0.35
CMTM3-215ENST00000568477 MB21D1Q8N884 522 aa17.23■□□□□ 0.35
CMTM3-215ENST00000568477 USP6NLQ92738 828 aa17.23■□□□□ 0.35
CMTM3-215ENST00000568477 APBA2Q99767 749 aa17.23■□□□□ 0.35
CMTM3-215ENST00000568477 GOPCQ9HD26 462 aa17.23■□□□□ 0.35
CMTM3-215ENST00000568477 FARP2O94887 1054 aaPredicted RBP17.22■□□□□ 0.35
CMTM3-215ENST00000568477 TFRCP02786 760 aaKnown RBP17.22■□□□□ 0.35
CMTM3-215ENST00000568477 DSG3P32926 999 aa17.22■□□□□ 0.35
CMTM3-215ENST00000568477 TRIM32Q13049 653 aa17.22■□□□□ 0.35
CMTM3-215ENST00000568477 MAP2K5Q13163 448 aa17.22■□□□□ 0.35
CMTM3-215ENST00000568477 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.22■□□□□ 0.35
CMTM3-215ENST00000568477 NAPBQ9H115 298 aa17.22■□□□□ 0.35
CMTM3-215ENST00000568477 HMX1Q9NP08 348 aaPredicted RBP17.22■□□□□ 0.35
CMTM3-215ENST00000568477 IVNS1ABPQ9Y6Y0 642 aa17.22■□□□□ 0.35
CMTM3-215ENST00000568477 RPTORQ8N122 1335 aa17.21■□□□□ 0.35
CMTM3-215ENST00000568477 SLC15A5A6NIM6 579 aa17.21■□□□□ 0.35
CMTM3-215ENST00000568477 RAD21O60216 631 aa17.21■□□□□ 0.35
CMTM3-215ENST00000568477 NEFLP07196 543 aa17.21■□□□□ 0.35
CMTM3-215ENST00000568477 SLC3A2P08195 630 aaKnown RBP17.21■□□□□ 0.35
CMTM3-215ENST00000568477 PTPREP23469 700 aa17.21■□□□□ 0.35
CMTM3-215ENST00000568477 B4GALNT3Q6L9W6 998 aa17.21■□□□□ 0.35
CMTM3-215ENST00000568477 UBE2Q1Q7Z7E8 422 aa17.21■□□□□ 0.35
CMTM3-215ENST00000568477 ZNF444Q8N0Y2 327 aaPredicted RBP17.21■□□□□ 0.35
CMTM3-215ENST00000568477 GREB1LQ9C091 1923 aaPredicted RBP17.2■□□□□ 0.34
CMTM3-215ENST00000568477 PRDM1O75626 825 aa17.2■□□□□ 0.34
CMTM3-215ENST00000568477 PRKAR2AP13861 404 aaKnown RBP17.2■□□□□ 0.34
CMTM3-215ENST00000568477 PDE4BQ07343 736 aa17.2■□□□□ 0.34
CMTM3-215ENST00000568477 MAP3K21Q5TCX8 1036 aa17.2■□□□□ 0.34
CMTM3-215ENST00000568477 SAMD1Q6SPF0 538 aaPredicted RBP17.2■□□□□ 0.34
CMTM3-215ENST00000568477 CCDC129Q6ZRS4 1044 aa17.2■□□□□ 0.34
CMTM3-215ENST00000568477 SHCBP1Q8NEM2 672 aa17.2■□□□□ 0.34
CMTM3-215ENST00000568477 ATG4CQ96DT6 458 aa17.2■□□□□ 0.34
CMTM3-215ENST00000568477 HTATIP2Q9BUP3 242 aa17.2■□□□□ 0.34
CMTM3-215ENST00000568477 MOV10L1Q9BXT6 1211 aaKnown RBP17.2■□□□□ 0.34
CMTM3-215ENST00000568477 SPATC1LQ9H0A9 340 aa17.2■□□□□ 0.34
CMTM3-215ENST00000568477 CRISPLD2Q9H0B8 497 aa17.2■□□□□ 0.34
CMTM3-215ENST00000568477 NYAP2Q9P242 653 aa17.2■□□□□ 0.34
CMTM3-215ENST00000568477 RLFQ13129 1914 aa17.19■□□□□ 0.34
CMTM3-215ENST00000568477 A0A0G2JMZ2 1700 aa17.19■□□□□ 0.34
CMTM3-215ENST00000568477 IGHDP01880 384 aa17.19■□□□□ 0.34
CMTM3-215ENST00000568477 PPARAQ07869 468 aa17.19■□□□□ 0.34
CMTM3-215ENST00000568477 GRB14Q14449 540 aa17.19■□□□□ 0.34
CMTM3-215ENST00000568477 PLS1Q14651 629 aa17.19■□□□□ 0.34
CMTM3-215ENST00000568477 CCL14Q16627 93 aa17.19■□□□□ 0.34
CMTM3-215ENST00000568477 CHD1LQ86WJ1 897 aa17.19■□□□□ 0.34
CMTM3-215ENST00000568477 TICAM2Q86XR7 235 aa17.19■□□□□ 0.34
CMTM3-215ENST00000568477 HELLSQ9NRZ9 838 aa17.19■□□□□ 0.34
CMTM3-215ENST00000568477 SUPT16HQ9Y5B9 1047 aaKnown RBP17.19■□□□□ 0.34
CMTM3-215ENST00000568477 IGKV6D-41A0A0C4DH26 115 aa17.18■□□□□ 0.34
CMTM3-215ENST00000568477 NUCB1Q02818 461 aa17.18■□□□□ 0.34
CMTM3-215ENST00000568477 FAM83BQ5T0W9 1011 aa17.18■□□□□ 0.34
CMTM3-215ENST00000568477 FBXO28Q9NVF7 368 aa17.18■□□□□ 0.34
CMTM3-215ENST00000568477 TRIM6-TRIM34B2RNG4 842 aa17.17■□□□□ 0.34
CMTM3-215ENST00000568477 FOXP2O15409 715 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms