RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 MOGSQ13724 837 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 KRT32Q14532 448 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 SART3Q15020 963 aaKnown RBP14.34□□□□□ -0.11
SF3B3-208ENST00000567250 FAM43AQ8N2R8 423 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 ACER1Q8TDN7 264 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 PTPN18Q99952 460 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 UBAC1Q9BSL1 405 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.34□□□□□ -0.11
SF3B3-208ENST00000567250 VCPKMTQ9H867 229 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 ZFYVE28Q9HCC9 887 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 INCENPQ9NQS7 918 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 RNF186Q9NXI6 227 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 A0A0G2JMZ2 1700 aa14.34□□□□□ -0.11
SF3B3-208ENST00000567250 A0A1W2PRG0 241 aa14.33□□□□□ -0.12
SF3B3-208ENST00000567250 ERICH2A1L162 156 aa14.33□□□□□ -0.12
SF3B3-208ENST00000567250 WDR46O15213 610 aaKnown RBP14.33□□□□□ -0.12
SF3B3-208ENST00000567250 RAD21O60216 631 aa14.33□□□□□ -0.12
SF3B3-208ENST00000567250 TRPA1O75762 1119 aa14.33□□□□□ -0.12
SF3B3-208ENST00000567250 IRX3P78415 501 aaPredicted RBP14.33□□□□□ -0.12
SF3B3-208ENST00000567250 SMCR8Q8TEV9 937 aaPredicted RBP14.33□□□□□ -0.12
SF3B3-208ENST00000567250 TTC14Q96N46 770 aa14.33□□□□□ -0.12
SF3B3-208ENST00000567250 CLIP2Q9UDT6 1046 aa14.33□□□□□ -0.12
SF3B3-208ENST00000567250 TACC3Q9Y6A5 838 aa14.33□□□□□ -0.12
SF3B3-208ENST00000567250 HOXA7P31268 230 aaPredicted RBP14.32□□□□□ -0.12
SF3B3-208ENST00000567250 HSPA4P34932 840 aa14.32□□□□□ -0.12
SF3B3-208ENST00000567250 TREML2Q5T2D2 321 aa14.32□□□□□ -0.12
SF3B3-208ENST00000567250 GPAT2Q6NUI2 795 aa14.32□□□□□ -0.12
SF3B3-208ENST00000567250 GMCL1P1Q8NEA9 526 aa14.32□□□□□ -0.12
SF3B3-208ENST00000567250 GTF3C2Q8WUA4 911 aaPredicted RBP14.32□□□□□ -0.12
SF3B3-208ENST00000567250 MKL1Q969V6 931 aa14.32□□□□□ -0.12
SF3B3-208ENST00000567250 EMILIN3Q9NT22 766 aa14.32□□□□□ -0.12
SF3B3-208ENST00000567250 TNKSO95271 1327 aa14.32□□□□□ -0.12
SF3B3-208ENST00000567250 USP17L15C9J2P7 530 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 USP17L13C9JLJ4 530 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 USP17L11C9JVI0 530 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 USP17L18D6R9N7 530 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 USP17L22D6RA61 530 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 USP17L17D6RBQ6 530 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 USP17L19D6RCP7 530 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 USP17L20D6RJB6 530 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 NMT2O60551 498 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 TOP1P11387 765 aaKnown RBP14.31□□□□□ -0.12
SF3B3-208ENST00000567250 NOVP48745 357 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 CTCFP49711 727 aaPredicted RBP14.31□□□□□ -0.12
SF3B3-208ENST00000567250 USP17L24Q0WX57 530 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 CRHR2Q13324 411 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 DGKZQ13574 1117 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 TSGA10IPQ3SY00 556 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 NOM1Q5C9Z4 860 aaKnown RBP14.31□□□□□ -0.12
SF3B3-208ENST00000567250 DGKHQ86XP1 1220 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 SIAH1Q8IUQ4 282 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 LRRC47Q8N1G4 583 aaKnown RBP14.31□□□□□ -0.12
SF3B3-208ENST00000567250 ZSCAN10Q96SZ4 725 aaPredicted RBP14.31□□□□□ -0.12
SF3B3-208ENST00000567250 MTA3Q9BTC8 594 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 TANGO6Q9C0B7 1094 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 IL17RBQ9NRM6 502 aa14.31□□□□□ -0.12
SF3B3-208ENST00000567250 MGAMO43451 1857 aa14.3□□□□□ -0.12
SF3B3-208ENST00000567250 TLR2O60603 784 aa14.3□□□□□ -0.12
SF3B3-208ENST00000567250 HMGB1P09429 215 aaKnown RBP14.3□□□□□ -0.12
SF3B3-208ENST00000567250 MCM5P33992 734 aa14.3□□□□□ -0.12
SF3B3-208ENST00000567250 CACNB1Q02641 598 aaPredicted RBP14.3□□□□□ -0.12
SF3B3-208ENST00000567250 STOX1Q6ZVD7 989 aa14.3□□□□□ -0.12
SF3B3-208ENST00000567250 ZKSCAN3Q9BRR0 538 aa14.3□□□□□ -0.12
SF3B3-208ENST00000567250 RPAP3Q9H6T3 665 aaPredicted RBP14.3□□□□□ -0.12
SF3B3-208ENST00000567250 KAT14Q9H8E8 782 aa14.3□□□□□ -0.12
SF3B3-208ENST00000567250 ZSWIM5Q9P217 1185 aa14.3□□□□□ -0.12
SF3B3-208ENST00000567250 RLFQ13129 1914 aa14.3□□□□□ -0.12
SF3B3-208ENST00000567250 MYPNQ86TC9 1320 aa14.3□□□□□ -0.12
SF3B3-208ENST00000567250 COL11A1P12107 1806 aaPredicted RBP14.29□□□□□ -0.12
SF3B3-208ENST00000567250 F5H6K3 240 aa14.29□□□□□ -0.12
SF3B3-208ENST00000567250 FOXN1O15353 648 aa14.29□□□□□ -0.12
SF3B3-208ENST00000567250 TBC1D8O95759 1140 aa14.29□□□□□ -0.12
SF3B3-208ENST00000567250 GCLCP48506 637 aaPredicted RBP14.29□□□□□ -0.12
SF3B3-208ENST00000567250 KLRC3Q07444 240 aa14.29□□□□□ -0.12
SF3B3-208ENST00000567250 IFIT1BQ5T764 474 aaKnown RBP14.29□□□□□ -0.12
SF3B3-208ENST00000567250 MB21D2Q8IYB1 491 aaPredicted RBP14.29□□□□□ -0.12
SF3B3-208ENST00000567250 SPICE1Q8N0Z3 855 aa14.29□□□□□ -0.12
SF3B3-208ENST00000567250 GMCL1Q96IK5 515 aa14.29□□□□□ -0.12
SF3B3-208ENST00000567250 NEK1Q96PY6 1258 aa14.29□□□□□ -0.12
SF3B3-208ENST00000567250 ASCC2Q9H1I8 757 aaPredicted RBP14.29□□□□□ -0.12
SF3B3-208ENST00000567250 TAF6LQ9Y6J9 622 aa14.29□□□□□ -0.12
SF3B3-208ENST00000567250 WDR19Q8NEZ3 1342 aa14.29□□□□□ -0.12
SF3B3-208ENST00000567250 IFIT3O14879 490 aaKnown RBP14.28□□□□□ -0.12
SF3B3-208ENST00000567250 NDUFB10O96000 172 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 CYP2C8P10632 490 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 HSPA8P11142 646 aaKnown RBP14.28□□□□□ -0.12
SF3B3-208ENST00000567250 PSMA5P28066 241 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 SLC1A4P43007 532 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 WTAPQ15007 396 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 C8orf34Q49A92 452 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 SLFN13Q68D06 897 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 CATSPERGQ6ZRH7 1159 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 CYB5R4Q7L1T6 521 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 ENAHQ8N8S7 591 aaPredicted RBP14.28□□□□□ -0.12
SF3B3-208ENST00000567250 KCNB2Q92953 911 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 TMEM87BQ96K49 555 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 ADGRA2Q96PE1 1338 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 TMEM47Q9BQJ4 181 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 USP26Q9BXU7 913 aa14.28□□□□□ -0.12
SF3B3-208ENST00000567250 ISY1Q9ULR0 285 aaKnown RBP14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms