RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 TIFAQ96CG3 184 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 DBNDD2Q9BQY9 259 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 TRIM34Q9BYJ4 488 aa13.7□□□□□ -0.22
CLN3-226ENST00000567160 TLR7Q9NYK1 1049 aaKnown RBP13.7□□□□□ -0.22
CLN3-226ENST00000567160 SYNGAP1Q96PV0 1343 aa13.69□□□□□ -0.22
CLN3-226ENST00000567160 PTPREP23469 700 aa13.69□□□□□ -0.22
CLN3-226ENST00000567160 CYP2C19P33261 490 aa13.69□□□□□ -0.22
CLN3-226ENST00000567160 MECOMQ03112 1051 aa13.69□□□□□ -0.22
CLN3-226ENST00000567160 FPGSQ05932 587 aa13.69□□□□□ -0.22
CLN3-226ENST00000567160 RRP1BQ14684 758 aaKnown RBP13.69□□□□□ -0.22
CLN3-226ENST00000567160 GORABQ5T7V8 394 aa13.69□□□□□ -0.22
CLN3-226ENST00000567160 CCDC102BQ68D86 513 aa13.69□□□□□ -0.22
CLN3-226ENST00000567160 SH3RF1Q7Z6J0 888 aa13.69□□□□□ -0.22
CLN3-226ENST00000567160 OTUD7AQ8TE49 926 aaPredicted RBP13.69□□□□□ -0.22
CLN3-226ENST00000567160 XAGE2Q96GT9 111 aa13.69□□□□□ -0.22
CLN3-226ENST00000567160 DHX36Q9H2U1 1008 aaKnown RBP13.69□□□□□ -0.22
CLN3-226ENST00000567160 CLTBP09497 229 aa13.68□□□□□ -0.22
CLN3-226ENST00000567160 CYBAP13498 195 aa13.68□□□□□ -0.22
CLN3-226ENST00000567160 RAG1P15918 1043 aa13.68□□□□□ -0.22
CLN3-226ENST00000567160 RASGRF1Q13972 1273 aa13.68□□□□□ -0.22
CLN3-226ENST00000567160 GRB14Q14449 540 aa13.68□□□□□ -0.22
CLN3-226ENST00000567160 USP17L2Q6R6M4 530 aa13.68□□□□□ -0.22
CLN3-226ENST00000567160 TSPYL2Q9H2G4 693 aaPredicted RBP13.68□□□□□ -0.22
CLN3-226ENST00000567160 DBNLQ9UJU6 430 aaKnown RBP13.68□□□□□ -0.22
CLN3-226ENST00000567160 NDUFB9Q9Y6M9 179 aa13.68□□□□□ -0.22
CLN3-226ENST00000567160 MYH7P12883 1935 aa13.68□□□□□ -0.22
CLN3-226ENST00000567160 USP17L15C9J2P7 530 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 USP17L13C9JLJ4 530 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 USP17L11C9JVI0 530 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 USP17L18D6R9N7 530 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 USP17L22D6RA61 530 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 USP17L17D6RBQ6 530 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 USP17L19D6RCP7 530 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 USP17L20D6RJB6 530 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 SEPT4O43236 478 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 PDE4AP27815 886 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 ADCYAP1R1P41586 468 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 TLE2Q04725 743 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 USP17L24Q0WX57 530 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 DPP9Q86TI2 863 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 TEX11Q8IYF3 940 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 TRPV1Q8NER1 839 aa13.67□□□□□ -0.22
CLN3-226ENST00000567160 NOL10Q9BSC4 688 aaKnown RBP13.67□□□□□ -0.22
CLN3-226ENST00000567160 TSHZ3Q63HK5 1081 aa13.66□□□□□ -0.22
CLN3-226ENST00000567160 OLFML2BQ68BL8 750 aa13.66□□□□□ -0.22
CLN3-226ENST00000567160 CCDC174Q6PII3 467 aa13.66□□□□□ -0.22
CLN3-226ENST00000567160 POTEEQ6S8J3 1075 aa13.66□□□□□ -0.22
CLN3-226ENST00000567160 CRACR2BQ8N4Y2 399 aaPredicted RBP13.66□□□□□ -0.22
CLN3-226ENST00000567160 NPLOC4Q8TAT6 608 aa13.66□□□□□ -0.22
CLN3-226ENST00000567160 FERMT2Q96AC1 680 aa13.66□□□□□ -0.22
CLN3-226ENST00000567160 EMILIN3Q9NT22 766 aa13.66□□□□□ -0.22
CLN3-226ENST00000567160 SLC5A4Q9NY91 659 aa13.66□□□□□ -0.22
CLN3-226ENST00000567160 ZBTB21Q9ULJ3 1066 aa13.66□□□□□ -0.22
CLN3-226ENST00000567160 ZNF236Q9UL36 1845 aa13.65□□□□□ -0.22
CLN3-226ENST00000567160 KIAA0355O15063 1070 aa13.65□□□□□ -0.22
CLN3-226ENST00000567160 CNMDO75829 334 aa13.65□□□□□ -0.22
CLN3-226ENST00000567160 MX1P20591 662 aa13.65□□□□□ -0.22
CLN3-226ENST00000567160 EPHB4P54760 987 aa13.65□□□□□ -0.22
CLN3-226ENST00000567160 LRRC41Q15345 812 aa13.65□□□□□ -0.22
CLN3-226ENST00000567160 TTC39AQ5SRH9 613 aa13.65□□□□□ -0.22
CLN3-226ENST00000567160 CCDC129Q6ZRS4 1044 aa13.65□□□□□ -0.22
CLN3-226ENST00000567160 FOXP4Q8IVH2 680 aaPredicted RBP13.65□□□□□ -0.22
CLN3-226ENST00000567160 GPATCH3Q96I76 525 aa13.65□□□□□ -0.22
CLN3-226ENST00000567160 FEZ1Q99689 392 aa13.65□□□□□ -0.22
CLN3-226ENST00000567160 SIPA1L1O43166 1804 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 PIEZO1Q92508 2521 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 TCF20Q9UGU0 1960 aaKnown RBP13.64□□□□□ -0.23
CLN3-226ENST00000567160 PLXNA1Q9UIW2 1896 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 STRNO43815 780 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 GDF11O95390 407 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 PLCG2P16885 1265 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 USP14P54578 494 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 AAK1Q2M2I8 961 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 CCDC158Q5M9N0 1113 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 ANO1Q5XXA6 986 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 LBX2Q6XYB7 198 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 PLEKHM2Q8IWE5 1019 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 NSUN4Q96CB9 384 aaKnown RBP13.64□□□□□ -0.23
CLN3-226ENST00000567160 C12orf42Q96LP6 360 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 PRDM12Q9H4Q4 367 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 TMEM39AQ9NV64 488 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 PHF24Q9UPV7 400 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 SALL3Q9BXA9 1300 aa13.64□□□□□ -0.23
CLN3-226ENST00000567160 PQBP1O60828 265 aaKnown RBP13.63□□□□□ -0.23
CLN3-226ENST00000567160 BAG3O95817 575 aa13.63□□□□□ -0.23
CLN3-226ENST00000567160 IGHA2P01877 340 aa13.63□□□□□ -0.23
CLN3-226ENST00000567160 IGFBP4P22692 258 aa13.63□□□□□ -0.23
CLN3-226ENST00000567160 ITGB8P26012 769 aa13.63□□□□□ -0.23
CLN3-226ENST00000567160 PDE1AP54750 535 aa13.63□□□□□ -0.23
CLN3-226ENST00000567160 CCDC85BQ15834 202 aaPredicted RBP13.63□□□□□ -0.23
CLN3-226ENST00000567160 CATSPERGQ6ZRH7 1159 aa13.63□□□□□ -0.23
CLN3-226ENST00000567160 RNF180Q86T96 592 aa13.63□□□□□ -0.23
CLN3-226ENST00000567160 ZNF384Q8TF68 577 aa13.63□□□□□ -0.23
CLN3-226ENST00000567160 ECHDC1Q9NTX5 307 aa13.63□□□□□ -0.23
CLN3-226ENST00000567160 RAI14Q9P0K7 980 aa13.63□□□□□ -0.23
CLN3-226ENST00000567160 HLA-DOAP06340 250 aa13.62□□□□□ -0.23
CLN3-226ENST00000567160 UQCRFS1P1P0C7P4 283 aa13.62□□□□□ -0.23
CLN3-226ENST00000567160 RARBP10826 455 aa13.62□□□□□ -0.23
CLN3-226ENST00000567160 ADORA2AP29274 412 aa13.62□□□□□ -0.23
CLN3-226ENST00000567160 JAG1P78504 1218 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms