RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 MYH13Q9UKX3 1938 aa7.13□□□□□ -1.27
CLN3-223ENST00000566472 GAKO14976 1311 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 GOLGA6L9A6NEM1 432 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 WTIPA6NIX2 430 aaPredicted RBP7.12□□□□□ -1.27
CLN3-223ENST00000566472 hCG_1984214I3L0E3 225 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 LAD1O00515 517 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 GTPBP6O43824 516 aaPredicted RBP7.12□□□□□ -1.27
CLN3-223ENST00000566472 BBOX1O75936 387 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 MYL1P05976 194 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 PRR29P0C7W0 189 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 CYP2D6P10635 497 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 TOP1P11387 765 aaKnown RBP7.12□□□□□ -1.27
CLN3-223ENST00000566472 BMP6P22004 513 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 HOXA10P31260 410 aaPredicted RBP7.12□□□□□ -1.27
CLN3-223ENST00000566472 LONP1P36776 959 aaKnown RBP7.12□□□□□ -1.27
CLN3-223ENST00000566472 TXLNAP40222 546 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 TFAP4Q01664 338 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 GRIN1Q05586 938 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 DPYDQ12882 1025 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 ARID5BQ14865 1188 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 CFAP100Q494V2 611 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 ARMCX5Q6P1M9 558 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 FAM196AQ6ZSG2 479 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 PTF1AQ7RTS3 328 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 BLIDQ8IZY5 108 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 CCDC82Q8N4S0 544 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 ZNF713Q8N859 430 aaPredicted RBP7.12□□□□□ -1.27
CLN3-223ENST00000566472 PNMA1Q8ND90 353 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 KIF18AQ8NI77 898 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 SYMPKQ92797 1274 aaKnown RBP7.12□□□□□ -1.27
CLN3-223ENST00000566472 RPGRQ92834 1020 aaKnown RBP7.12□□□□□ -1.27
CLN3-223ENST00000566472 CRAMP1Q96RY5 1269 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 RTFDC1Q9BY42 306 aaPredicted RBP7.12□□□□□ -1.27
CLN3-223ENST00000566472 TMX1Q9H3N1 280 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 ANKIB1Q9P2G1 1089 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 PCDHA4Q9UN74 947 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 SUGT1Q9Y2Z0 365 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 SBF2Q86WG5 1849 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 LRRC37AA6NMS7 1700 aa7.12□□□□□ -1.27
CLN3-223ENST00000566472 DDX60LQ5H9U9 1706 aaKnown RBP7.12□□□□□ -1.27
CLN3-223ENST00000566472 CCDC88AQ3V6T2 1871 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 NAV1Q8NEY1 1877 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 PLIN4Q96Q06 1357 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 FAM205AQ6ZU69 1335 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 PHLPP2Q6ZVD8 1323 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 MYO3BQ8WXR4 1341 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 GPR75-ASB3A0A0A6YYF3 556 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 FAM205CA6NFA0 338 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 SMIM22K7EJ46 135 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 ARHGAP6O43182 974 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 ZSCAN12O43309 604 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 USP17L8P0C7I0 530 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 TSPY3P0CV98 308 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 TSPY8P0CW00 308 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 ATP1A3P13637 1013 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 PRPHP41219 470 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 NOVP48745 357 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 KCNQ4P56696 695 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 GPSM2P81274 684 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 RBM10P98175 930 aaKnown RBP7.11□□□□□ -1.27
CLN3-223ENST00000566472 SPAG1Q07617 926 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 TBX2Q13207 712 aaPredicted RBP7.11□□□□□ -1.27
CLN3-223ENST00000566472 E2F4Q16254 413 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 EARS2Q5JPH6 523 aaKnown RBP7.11□□□□□ -1.27
CLN3-223ENST00000566472 FAM47AQ5JRC9 791 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 SPATA1Q5VX52 437 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 E4F1Q66K89 784 aaPredicted RBP7.11□□□□□ -1.27
CLN3-223ENST00000566472 C16orf86Q6ZW13 317 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 TXNRD3Q86VQ6 643 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 ZNF444Q8N0Y2 327 aaPredicted RBP7.11□□□□□ -1.27
CLN3-223ENST00000566472 IQUBQ8NA54 791 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 NEDD1Q8NHV4 660 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 SH3RF3Q8TEJ3 882 aaPredicted RBP7.11□□□□□ -1.27
CLN3-223ENST00000566472 CCDC12Q8WUD4 166 aaPredicted RBP7.11□□□□□ -1.27
CLN3-223ENST00000566472 DHX58Q96C10 678 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 PAGE5Q96GU1 130 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 PPP1R13BQ96KQ4 1090 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 CTAGE1Q96RT6 745 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 SPZ1Q9BXG8 430 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 GTPBP4Q9BZE4 634 aaKnown RBP7.11□□□□□ -1.27
CLN3-223ENST00000566472 MAGEF1Q9HAY2 307 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 MKNK2Q9HBH9 465 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 CD209Q9NNX6 404 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 FANCLQ9NW38 375 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 RMND1Q9NWS8 449 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 GGA1Q9UJY5 639 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 TAOK2Q9UL54 1235 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 TRPC5Q9UL62 973 aaPredicted RBP7.11□□□□□ -1.27
CLN3-223ENST00000566472 NFE2L3Q9Y4A8 694 aa7.11□□□□□ -1.27
CLN3-223ENST00000566472 SNED1Q8TER0 1413 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 SYNRGQ9UMZ2 1314 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.1□□□□□ -1.27
CLN3-223ENST00000566472 A0A1B0GTH6 734 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 CCDC194A0A1B0GVG4 234 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 ESYT2A0FGR8 921 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 KLRG2A4D1S0 409 aaPredicted RBP7.1□□□□□ -1.27
CLN3-223ENST00000566472 PALM3A6NDB9 673 aaPredicted RBP7.1□□□□□ -1.27
CLN3-223ENST00000566472 USP27XA6NNY8 438 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 M0R2N6 131 aa7.1□□□□□ -1.27
CLN3-223ENST00000566472 FOXN1O15353 648 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms