RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 MAP3K12Q12852 859 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 TMEM67Q5HYA8 995 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 NKX2-3Q8TAU0 364 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 SENP2Q9HC62 589 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 CD209Q9NNX6 404 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 FAM217BQ9NTX9 383 aaPredicted RBP15.1■□□□□ 0.01
VPS4A-204ENST00000566354 PPP1R1BQ9UD71 204 aaPredicted RBP15.1■□□□□ 0.01
VPS4A-204ENST00000566354 CHD4Q14839 1912 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 GOLGA6L9A6NEM1 432 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 RANBP6O60518 1105 aaKnown RBP15.1■□□□□ 0.01
VPS4A-204ENST00000566354 NOSTRINQ8IVI9 506 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 MNS1Q8NEH6 495 aa15.1■□□□□ 0.01
VPS4A-204ENST00000566354 EFCAB8A8MWE9 144 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 C21orf2O43822 256 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 STRBPQ96SI9 672 aaKnown RBP15.09■□□□□ 0.01
VPS4A-204ENST00000566354 FHOD1Q9Y613 1164 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 SLC12A7Q9Y666 1083 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 UTRNP46939 3433 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 TMEM232C9JQI7 657 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 URI1O94763 535 aaPredicted RBP15.09■□□□□ 0.01
VPS4A-204ENST00000566354 FMNL1O95466 1100 aaPredicted RBP15.09■□□□□ 0.01
VPS4A-204ENST00000566354 PTGER2P43116 358 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 TBX2Q13207 712 aaPredicted RBP15.09■□□□□ 0.01
VPS4A-204ENST00000566354 SAFBQ15424 915 aaKnown RBP eCLIP15.09■□□□□ 0.01
VPS4A-204ENST00000566354 TMEM139Q8IV31 216 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 TTLL6Q8N841 843 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 MLKLQ8NB16 471 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 AIDAQ96BJ3 306 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 NOL10Q9BSC4 688 aaKnown RBP15.09■□□□□ 0.01
VPS4A-204ENST00000566354 SLC26A6Q9BXS9 759 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 RAI14Q9P0K7 980 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 DACH1Q9UI36 760 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 PPP2R2CQ9Y2T4 447 aa15.09■□□□□ 0.01
VPS4A-204ENST00000566354 KIAA1551Q9HCM1 1747 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 STX10O60499 249 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 IFNAR1P17181 557 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 BMP6P22004 513 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 NT5DC1Q5TFE4 455 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 BAG1Q99933 345 aaPredicted RBP15.08■□□□□ 0
VPS4A-204ENST00000566354 CNNM2Q9H8M5 875 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 PDS5AQ29RF7 1337 aaKnown RBP15.08■□□□□ 0
VPS4A-204ENST00000566354 PATL2C9JE40 543 aaKnown RBP15.08■□□□□ 0
VPS4A-204ENST00000566354 PRDX5P30044 214 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 PDE4BQ07343 736 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 STK11IPQ8N1F8 1099 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 ZNF384Q8TF68 577 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 ZC3H12CQ9C0D7 883 aaKnown RBP15.08■□□□□ 0
VPS4A-204ENST00000566354 INTS13Q9NVM9 706 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 ZSWIM5Q9P217 1185 aa15.08■□□□□ 0
VPS4A-204ENST00000566354 IFIT3O14879 490 aaKnown RBP15.07■□□□□ 0
VPS4A-204ENST00000566354 TADA3O75528 432 aa15.07■□□□□ 0
VPS4A-204ENST00000566354 MMP1P03956 469 aa15.07■□□□□ 0
VPS4A-204ENST00000566354 PNMA6AP0CW24 399 aaPredicted RBP15.07■□□□□ 0
VPS4A-204ENST00000566354 IL1R1P14778 569 aa15.07■□□□□ 0
VPS4A-204ENST00000566354 PTPREP23469 700 aa15.07■□□□□ 0
VPS4A-204ENST00000566354 POSTNQ15063 836 aa15.07■□□□□ 0
VPS4A-204ENST00000566354 RILPL1Q5EBL4 403 aa15.07■□□□□ 0
VPS4A-204ENST00000566354 TMCO3Q6UWJ1 677 aa15.07■□□□□ 0
VPS4A-204ENST00000566354 ADGRA1Q86SQ6 560 aa15.07■□□□□ 0
VPS4A-204ENST00000566354 ENOX1Q8TC92 643 aaKnown RBP15.07■□□□□ 0
VPS4A-204ENST00000566354 MYL10Q9BUA6 226 aa15.07■□□□□ 0
VPS4A-204ENST00000566354 SNED1Q8TER0 1413 aa15.07■□□□□ 0
VPS4A-204ENST00000566354 ECM29Q5VYK3 1845 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 VWA3AA6NCI4 1184 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 ZRANB2O95218 330 aaKnown RBP eCLIP15.06■□□□□ 0
VPS4A-204ENST00000566354 ZNF18P17022 549 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 SARSP49591 514 aaKnown RBP15.06■□□□□ 0
VPS4A-204ENST00000566354 DOK7Q18PE1 504 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 SPECC1LQ69YQ0 1117 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 TRIM22Q8IYM9 498 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 PLCD3Q8N3E9 789 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 TRIML1Q8N9V2 468 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 ZNF579Q8NAF0 562 aaKnown RBP15.06■□□□□ 0
VPS4A-204ENST00000566354 KRT23Q9C075 422 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 FOXP1Q9H334 677 aaPredicted RBP15.06■□□□□ 0
VPS4A-204ENST00000566354 MAN1B1Q9UKM7 699 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 NID2Q14112 1375 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 BTBD18B2RXH4 712 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 FANCGO15287 622 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 FOXN1O15353 648 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 ATP8B1O43520 1251 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 TOB1P50616 345 aaPredicted RBP15.06■□□□□ 0
VPS4A-204ENST00000566354 GRIK5Q16478 980 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 KANK3Q6NY19 840 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 IFNL3Q8IZI9 196 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 NAPBQ9H115 298 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 FBXO2Q9UK22 296 aaPredicted RBP15.06■□□□□ 0
VPS4A-204ENST00000566354 NFE2L3Q9Y4A8 694 aa15.06■□□□□ 0
VPS4A-204ENST00000566354 CCDC66A2RUB6 948 aa15.05■□□□□ 0
VPS4A-204ENST00000566354 CYP7A1P22680 504 aa15.05■□□□□ 0
VPS4A-204ENST00000566354 TGFB2P61812 414 aa15.05■□□□□ 0
VPS4A-204ENST00000566354 GOLGA8FQ08AF8 430 aa15.05■□□□□ 0
VPS4A-204ENST00000566354 GOLGA8DPQ0D2H9 430 aa15.05■□□□□ 0
VPS4A-204ENST00000566354 DIS3L2Q8IYB7 885 aaKnown RBP15.05■□□□□ 0
VPS4A-204ENST00000566354 CNPY4Q8N129 248 aa15.05■□□□□ 0
VPS4A-204ENST00000566354 MIGA1Q8NAN2 632 aa15.05■□□□□ 0
VPS4A-204ENST00000566354 SMARCE1Q969G3 411 aa15.05■□□□□ 0
VPS4A-204ENST00000566354 CARD6Q9BX69 1037 aa15.05■□□□□ 0
VPS4A-204ENST00000566354 POLR2DO15514 142 aaKnown RBP15.05■□□□□ -0
VPS4A-204ENST00000566354 CASQ1P31415 396 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms