RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FAM110CQ1W6H9 321 aa20.5■□□□□ 0.87
CLN3-217ENST00000565354 ABCB5Q2M3G0 1257 aa20.5■□□□□ 0.87
CLN3-217ENST00000565354 TATDN1Q6P1N9 297 aa20.5■□□□□ 0.87
CLN3-217ENST00000565354 C7orf61Q8IZ16 206 aa20.5■□□□□ 0.87
CLN3-217ENST00000565354 SLC44A5Q8NCS7 719 aa20.5■□□□□ 0.87
CLN3-217ENST00000565354 MKNK2Q9HBH9 465 aa20.5■□□□□ 0.87
CLN3-217ENST00000565354 AS3MTQ9HBK9 375 aa20.5■□□□□ 0.87
CLN3-217ENST00000565354 ZNF287Q9HBT7 754 aa20.5■□□□□ 0.87
CLN3-217ENST00000565354 GINM1Q9NU53 330 aa20.5■□□□□ 0.87
CLN3-217ENST00000565354 PNMA3Q9UL41 463 aa20.5■□□□□ 0.87
CLN3-217ENST00000565354 LOC285556D6RIA3 1793 aa20.49■□□□□ 0.87
CLN3-217ENST00000565354 MYH8P13535 1937 aa20.49■□□□□ 0.87
CLN3-217ENST00000565354 USP17L5A8MUK1 530 aa20.49■□□□□ 0.87
CLN3-217ENST00000565354 HMGCRP04035 888 aa20.49■□□□□ 0.87
CLN3-217ENST00000565354 SHMT1P34896 483 aa20.49■□□□□ 0.87
CLN3-217ENST00000565354 CDK8P49336 464 aa20.49■□□□□ 0.87
CLN3-217ENST00000565354 PPARAQ07869 468 aa20.49■□□□□ 0.87
CLN3-217ENST00000565354 RRP1BQ14684 758 aaKnown RBP20.49■□□□□ 0.87
CLN3-217ENST00000565354 TREML2Q5T2D2 321 aa20.49■□□□□ 0.87
CLN3-217ENST00000565354 C16orf86Q6ZW13 317 aa20.49■□□□□ 0.87
CLN3-217ENST00000565354 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.49■□□□□ 0.87
CLN3-217ENST00000565354 GH2P01242 217 aa20.48■□□□□ 0.87
CLN3-217ENST00000565354 PDE4BQ07343 736 aa20.48■□□□□ 0.87
CLN3-217ENST00000565354 ALX1Q15699 326 aa20.48■□□□□ 0.87
CLN3-217ENST00000565354 CCDC84Q86UT8 332 aaPredicted RBP20.48■□□□□ 0.87
CLN3-217ENST00000565354 TBC1D2Q9BYX2 928 aa20.48■□□□□ 0.87
CLN3-217ENST00000565354 ZBTB21Q9ULJ3 1066 aa20.48■□□□□ 0.87
CLN3-217ENST00000565354 ZMYND8Q9ULU4 1186 aaPredicted RBP20.48■□□□□ 0.87
CLN3-217ENST00000565354 SMIM22K7EJ46 135 aa20.47■□□□□ 0.87
CLN3-217ENST00000565354 CDC45O75419 566 aa20.47■□□□□ 0.87
CLN3-217ENST00000565354 RAB3GAP1Q15042 981 aa20.47■□□□□ 0.87
CLN3-217ENST00000565354 KIAA1211Q6ZU35 1233 aa20.47■□□□□ 0.87
CLN3-217ENST00000565354 DEFB123Q8N688 67 aa20.47■□□□□ 0.87
CLN3-217ENST00000565354 PROCA1Q8NCQ7 364 aaPredicted RBP20.47■□□□□ 0.87
CLN3-217ENST00000565354 NBPF3Q9H094 633 aa20.47■□□□□ 0.87
CLN3-217ENST00000565354 RPTORQ8N122 1335 aa20.47■□□□□ 0.87
CLN3-217ENST00000565354 ROBO3Q96MS0 1386 aa20.46■□□□□ 0.87
CLN3-217ENST00000565354 PLXNB2O15031 1838 aa20.46■□□□□ 0.87
CLN3-217ENST00000565354 UNC80Q8N2C7 3258 aa20.46■□□□□ 0.87
CLN3-217ENST00000565354 FOXP2O15409 715 aa20.46■□□□□ 0.87
CLN3-217ENST00000565354 FGAP02671 866 aa20.46■□□□□ 0.87
CLN3-217ENST00000565354 GCLCP48506 637 aaPredicted RBP20.46■□□□□ 0.87
CLN3-217ENST00000565354 ZNF444Q8N0Y2 327 aaPredicted RBP20.46■□□□□ 0.87
CLN3-217ENST00000565354 CCDC17Q96LX7 622 aa20.46■□□□□ 0.87
CLN3-217ENST00000565354 DSCC1Q9BVC3 393 aa20.46■□□□□ 0.87
CLN3-217ENST00000565354 HMX1Q9NP08 348 aaPredicted RBP20.46■□□□□ 0.87
CLN3-217ENST00000565354 ZMYM6O95789 1325 aa20.46■□□□□ 0.87
CLN3-217ENST00000565354 SGSM2O43147 1006 aa20.45■□□□□ 0.86
CLN3-217ENST00000565354 SHROOM1Q2M3G4 852 aaPredicted RBP20.45■□□□□ 0.86
CLN3-217ENST00000565354 LRIT3Q3SXY7 679 aa20.45■□□□□ 0.86
CLN3-217ENST00000565354 ZNF280CQ8ND82 737 aa20.45■□□□□ 0.86
CLN3-217ENST00000565354 CTNNA3Q9UI47 895 aa20.45■□□□□ 0.86
CLN3-217ENST00000565354 GJD2Q9UKL4 321 aa20.45■□□□□ 0.86
CLN3-217ENST00000565354 HAND2P61296 217 aa20.44■□□□□ 0.86
CLN3-217ENST00000565354 CTDSPL2Q05D32 466 aa20.44■□□□□ 0.86
CLN3-217ENST00000565354 TRIM32Q13049 653 aa20.44■□□□□ 0.86
CLN3-217ENST00000565354 SPP2Q13103 211 aa20.44■□□□□ 0.86
CLN3-217ENST00000565354 TMEM179Q6ZVK1 233 aa20.44■□□□□ 0.86
CLN3-217ENST00000565354 Q7L0L9 218 aa20.44■□□□□ 0.86
CLN3-217ENST00000565354 IL25Q9H293 177 aa20.44■□□□□ 0.86
CLN3-217ENST00000565354 TOMM22Q9NS69 142 aa20.44■□□□□ 0.86
CLN3-217ENST00000565354 STXBP5LQ9Y2K9 1186 aa20.44■□□□□ 0.86
CLN3-217ENST00000565354 ZNF213O14771 459 aa20.43■□□□□ 0.86
CLN3-217ENST00000565354 PRDM1O75626 825 aa20.43■□□□□ 0.86
CLN3-217ENST00000565354 AKR1B1P15121 316 aa20.43■□□□□ 0.86
CLN3-217ENST00000565354 SYN1P17600 705 aa20.43■□□□□ 0.86
CLN3-217ENST00000565354 MAGEA10P43363 369 aaPredicted RBP20.43■□□□□ 0.86
CLN3-217ENST00000565354 JAG1P78504 1218 aa20.43■□□□□ 0.86
CLN3-217ENST00000565354 PABPC4Q13310 644 aaKnown RBP eCLIP20.43■□□□□ 0.863e-6■■■■□ 26.6
CLN3-217ENST00000565354 IMMTQ16891 758 aaKnown RBP20.43■□□□□ 0.86
CLN3-217ENST00000565354 TDHQ8IZJ6 230 aa20.43■□□□□ 0.86
CLN3-217ENST00000565354 FEZ1Q99689 392 aa20.43■□□□□ 0.86
CLN3-217ENST00000565354 ESYT1Q9BSJ8 1104 aa20.43■□□□□ 0.86
CLN3-217ENST00000565354 C11orf49Q9H6J7 331 aa20.43■□□□□ 0.86
CLN3-217ENST00000565354 HMGCS2P54868 508 aa20.42■□□□□ 0.86
CLN3-217ENST00000565354 SEPT2Q15019 361 aa20.42■□□□□ 0.86
CLN3-217ENST00000565354 WDR18Q9BV38 432 aa20.42■□□□□ 0.86
CLN3-217ENST00000565354 ASCC2Q9H1I8 757 aaPredicted RBP20.42■□□□□ 0.86
CLN3-217ENST00000565354 MTMR10Q9NXD2 777 aa20.42■□□□□ 0.86
CLN3-217ENST00000565354 ANAPC4Q9UJX5 808 aa20.42■□□□□ 0.86
CLN3-217ENST00000565354 OGDHLQ9ULD0 1010 aa20.42■□□□□ 0.86
CLN3-217ENST00000565354 USP17L10C9JJH3 530 aa20.41■□□□□ 0.86
CLN3-217ENST00000565354 RASA1P20936 1047 aa20.41■□□□□ 0.86
CLN3-217ENST00000565354 RRP12Q5JTH9 1297 aaKnown RBP20.41■□□□□ 0.86
CLN3-217ENST00000565354 RNF41Q9H4P4 317 aaPredicted RBP20.41■□□□□ 0.86
CLN3-217ENST00000565354 TMOD4Q9NZQ9 345 aa20.41■□□□□ 0.86
CLN3-217ENST00000565354 TSPY3P0CV98 308 aa20.4■□□□□ 0.86
CLN3-217ENST00000565354 TSPY8P0CW00 308 aa20.4■□□□□ 0.86
CLN3-217ENST00000565354 ATP2B2Q01814 1243 aa20.4■□□□□ 0.86
CLN3-217ENST00000565354 ICA1Q05084 483 aa20.4■□□□□ 0.86
CLN3-217ENST00000565354 MTMR2Q13614 643 aa20.4■□□□□ 0.86
CLN3-217ENST00000565354 TRIB2Q92519 343 aa20.4■□□□□ 0.86
CLN3-217ENST00000565354 ARHGEF10LQ9HCE6 1279 aa20.4■□□□□ 0.86
CLN3-217ENST00000565354 ANO2Q9NQ90 1003 aa20.4■□□□□ 0.86
CLN3-217ENST00000565354 MORF4L1Q9UBU8 362 aa20.4■□□□□ 0.86
CLN3-217ENST00000565354 U3KPZ7 1027 aaPredicted RBP20.4■□□□□ 0.86
CLN3-217ENST00000565354 TSPY2A6NKD2 308 aa20.39■□□□□ 0.85
CLN3-217ENST00000565354 C19orf81C9J6K1 198 aa20.39■□□□□ 0.85
CLN3-217ENST00000565354 BACE1P56817 501 aa20.39■□□□□ 0.85
CLN3-217ENST00000565354 PTH1RQ03431 593 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms