RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 TMX2Q9Y320 296 aa13□□□□□ -0.33
VPS39-208ENST00000564994 RANBP2P49792 3224 aaKnown RBP13□□□□□ -0.33
VPS39-208ENST00000564994 GPAA1O43292 621 aa12.99□□□□□ -0.33
VPS39-208ENST00000564994 ZFYP08048 801 aaPredicted RBP12.99□□□□□ -0.33
VPS39-208ENST00000564994 XRCC5P13010 732 aaKnown RBP12.99□□□□□ -0.33
VPS39-208ENST00000564994 MX1P20591 662 aa12.99□□□□□ -0.33
VPS39-208ENST00000564994 CCL14Q16627 93 aa12.99□□□□□ -0.33
VPS39-208ENST00000564994 SEC62Q99442 399 aaKnown RBP12.99□□□□□ -0.33
VPS39-208ENST00000564994 ARHGEF10LQ9HCE6 1279 aa12.99□□□□□ -0.33
VPS39-208ENST00000564994 MYH4Q9Y623 1939 aa12.99□□□□□ -0.33
VPS39-208ENST00000564994 ROBO3Q96MS0 1386 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 ZNFX1Q9P2E3 1918 aaKnown RBP12.98□□□□□ -0.33
VPS39-208ENST00000564994 RPTORQ8N122 1335 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 TRIOBPQ9H2D6 2365 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 FRMPD3Q5JV73 1810 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 ERC2O15083 957 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 GLRX3O76003 335 aaKnown RBP12.98□□□□□ -0.33
VPS39-208ENST00000564994 FARP2O94887 1054 aaPredicted RBP12.98□□□□□ -0.33
VPS39-208ENST00000564994 TFRCP02786 760 aaKnown RBP12.98□□□□□ -0.33
VPS39-208ENST00000564994 EEF2P13639 858 aaKnown RBP12.98□□□□□ -0.33
VPS39-208ENST00000564994 HDAC1Q13547 482 aaPredicted RBP12.98□□□□□ -0.33
VPS39-208ENST00000564994 COG2Q14746 738 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 MAP3K21Q5TCX8 1036 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 ANKRD45Q5TZF3 282 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 GIMAP6Q6P9H5 292 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 CCAR1Q8IX12 1150 aaKnown RBP12.98□□□□□ -0.33
VPS39-208ENST00000564994 SPICE1Q8N0Z3 855 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 STK11IPQ8N1F8 1099 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 TANGO6Q9C0B7 1094 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 VCPKMTQ9H867 229 aa12.98□□□□□ -0.33
VPS39-208ENST00000564994 MINDY4BA8MYZ0 360 aa12.97□□□□□ -0.33
VPS39-208ENST00000564994 H0YGN5 161 aa12.97□□□□□ -0.33
VPS39-208ENST00000564994 PRKAR2AP13861 404 aaKnown RBP12.97□□□□□ -0.33
VPS39-208ENST00000564994 RASA1P20936 1047 aa12.97□□□□□ -0.33
VPS39-208ENST00000564994 PTPREP23469 700 aa12.97□□□□□ -0.33
VPS39-208ENST00000564994 RGS2P41220 211 aa12.97□□□□□ -0.33
VPS39-208ENST00000564994 CCNA1P78396 465 aa12.97□□□□□ -0.33
VPS39-208ENST00000564994 MAP2K5Q13163 448 aa12.97□□□□□ -0.33
VPS39-208ENST00000564994 LPAR1Q92633 364 aa12.97□□□□□ -0.33
VPS39-208ENST00000564994 FSD1Q9BTV5 496 aa12.97□□□□□ -0.33
VPS39-208ENST00000564994 HMX1Q9NP08 348 aaPredicted RBP12.97□□□□□ -0.33
VPS39-208ENST00000564994 ZNF236Q9UL36 1845 aa12.97□□□□□ -0.33
VPS39-208ENST00000564994 PATL2C9JE40 543 aaKnown RBP12.96□□□□□ -0.33
VPS39-208ENST00000564994 ZKSCAN1P17029 563 aaPredicted RBP12.96□□□□□ -0.33
VPS39-208ENST00000564994 GNAT2P19087 354 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 DSG3P32926 999 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 MNX1P50219 401 aaPredicted RBP12.96□□□□□ -0.33
VPS39-208ENST00000564994 ATP2B2Q01814 1243 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 CACNB2Q08289 660 aaPredicted RBP12.96□□□□□ -0.33
VPS39-208ENST00000564994 GRB14Q14449 540 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 ZMYM1Q5SVZ6 1142 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 WDR78Q5VTH9 848 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 IFNL3Q8IZI9 196 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 DIS3LQ8TF46 1054 aaKnown RBP12.96□□□□□ -0.33
VPS39-208ENST00000564994 DPF3Q92784 378 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 GCC1Q96CN9 775 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 ATG4CQ96DT6 458 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 APBA2Q99767 749 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 MOV10L1Q9BXT6 1211 aaKnown RBP12.96□□□□□ -0.33
VPS39-208ENST00000564994 SH2D4AQ9H788 454 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 KANSL2Q9H9L4 492 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 HOXC10Q9NYD6 342 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 FLRT1Q9NZU1 646 aa12.96□□□□□ -0.33
VPS39-208ENST00000564994 SLC15A5A6NIM6 579 aa12.95□□□□□ -0.34
VPS39-208ENST00000564994 WDR46O15213 610 aaKnown RBP12.95□□□□□ -0.34
VPS39-208ENST00000564994 FLOT1O75955 427 aa12.95□□□□□ -0.34
VPS39-208ENST00000564994 APPP05067 770 aa12.95□□□□□ -0.34
VPS39-208ENST00000564994 CCND3P30281 292 aaPredicted RBP12.95□□□□□ -0.34
VPS39-208ENST00000564994 TDO2P48775 406 aa12.95□□□□□ -0.34
VPS39-208ENST00000564994 LRRFIP1Q32MZ4 808 aaKnown RBP12.95□□□□□ -0.34
VPS39-208ENST00000564994 NPLOC4Q8TAT6 608 aa12.95□□□□□ -0.34
VPS39-208ENST00000564994 PAWRQ96IZ0 340 aaKnown RBP12.95□□□□□ -0.34
VPS39-208ENST00000564994 SPATC1LQ9H0A9 340 aa12.95□□□□□ -0.34
VPS39-208ENST00000564994 MKNK2Q9HBH9 465 aa12.95□□□□□ -0.34
VPS39-208ENST00000564994 CWC22Q9HCG8 908 aaKnown RBP12.95□□□□□ -0.34
VPS39-208ENST00000564994 FBXO28Q9NVF7 368 aa12.95□□□□□ -0.34
VPS39-208ENST00000564994 STAP2Q9UGK3 403 aa12.95□□□□□ -0.34
VPS39-208ENST00000564994 IGKV6D-41A0A0C4DH26 115 aa12.94□□□□□ -0.34
VPS39-208ENST00000564994 FOXP2O15409 715 aa12.94□□□□□ -0.34
VPS39-208ENST00000564994 PRDM1O75626 825 aa12.94□□□□□ -0.34
VPS39-208ENST00000564994 HOXC6P09630 235 aa12.94□□□□□ -0.34
VPS39-208ENST00000564994 CAPN2P17655 700 aa12.94□□□□□ -0.34
VPS39-208ENST00000564994 PDE1AP54750 535 aa12.94□□□□□ -0.34
VPS39-208ENST00000564994 HABP4Q5JVS0 413 aaKnown RBP12.94□□□□□ -0.34
VPS39-208ENST00000564994 CCDC129Q6ZRS4 1044 aa12.94□□□□□ -0.34
VPS39-208ENST00000564994 TRMT44Q8IYL2 757 aaKnown RBP12.94□□□□□ -0.34
VPS39-208ENST00000564994 HTATIP2Q9BUP3 242 aa12.94□□□□□ -0.34
VPS39-208ENST00000564994 OGDHLQ9ULD0 1010 aa12.94□□□□□ -0.34
VPS39-208ENST00000564994 ADAMTS5Q9UNA0 930 aa12.94□□□□□ -0.34
VPS39-208ENST00000564994 COLQQ9Y215 455 aaPredicted RBP12.94□□□□□ -0.34
VPS39-208ENST00000564994 PLXNA1Q9UIW2 1896 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 SZT2Q5T011 3432 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 IGHA2P01877 340 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 ERCC3P19447 782 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 TMEM132BQ14DG7 1078 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 FAM83BQ5T0W9 1011 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 LHX8Q68G74 356 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 SAMD1Q6SPF0 538 aaPredicted RBP12.93□□□□□ -0.34
VPS39-208ENST00000564994 MB21D1Q8N884 522 aa12.93□□□□□ -0.34
VPS39-208ENST00000564994 ANKLE1Q8NAG6 615 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms