RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PLXNB2O15031 1838 aa20.39■□□□□ 0.85
CLN3-211ENST00000564091 SMIM22K7EJ46 135 aa20.38■□□□□ 0.85
CLN3-211ENST00000564091 RAB11FIP3O75154 756 aa20.38■□□□□ 0.85
CLN3-211ENST00000564091 MBD4O95243 580 aa20.38■□□□□ 0.85
CLN3-211ENST00000564091 CHGBP05060 677 aa20.38■□□□□ 0.85
CLN3-211ENST00000564091 CNGA1P29973 690 aa20.38■□□□□ 0.85
CLN3-211ENST00000564091 CLEC10AQ8IUN9 316 aa20.38■□□□□ 0.85
CLN3-211ENST00000564091 SIAH1Q8IUQ4 282 aa20.38■□□□□ 0.85
CLN3-211ENST00000564091 MOV10L1Q9BXT6 1211 aaKnown RBP20.38■□□□□ 0.85
CLN3-211ENST00000564091 MYO5AQ9Y4I1 1855 aaKnown RBP20.38■□□□□ 0.85
CLN3-211ENST00000564091 AKR1B1P15121 316 aa20.37■□□□□ 0.85
CLN3-211ENST00000564091 ADD2P35612 726 aa20.37■□□□□ 0.85
CLN3-211ENST00000564091 TMEM179Q6ZVK1 233 aa20.37■□□□□ 0.85
CLN3-211ENST00000564091 TRPV1Q8NER1 839 aa20.37■□□□□ 0.85
CLN3-211ENST00000564091 SENP6Q9GZR1 1112 aaPredicted RBP20.37■□□□□ 0.85
CLN3-211ENST00000564091 SWAP70Q9UH65 585 aa20.37■□□□□ 0.85
CLN3-211ENST00000564091 DDX20Q9UHI6 824 aaKnown RBP20.37■□□□□ 0.85
CLN3-211ENST00000564091 COL6A3P12111 3177 aa20.37■□□□□ 0.85
CLN3-211ENST00000564091 CYP2D7A0A087X1C5 515 aa20.36■□□□□ 0.85
CLN3-211ENST00000564091 DPP9Q86TI2 863 aa20.36■□□□□ 0.85
CLN3-211ENST00000564091 SPICE1Q8N0Z3 855 aa20.36■□□□□ 0.85
CLN3-211ENST00000564091 UBE2OQ9C0C9 1292 aaKnown RBP20.36■□□□□ 0.85
CLN3-211ENST00000564091 SPATC1LQ9H0A9 340 aa20.36■□□□□ 0.85
CLN3-211ENST00000564091 A0A0C4DFX4 3053 aa20.36■□□□□ 0.85
CLN3-211ENST00000564091 CDK5RAP2Q96SN8 1893 aa20.35■□□□□ 0.85
CLN3-211ENST00000564091 FOCADQ5VW36 1801 aa20.35■□□□□ 0.85
CLN3-211ENST00000564091 ATP5JP18859 108 aa20.35■□□□□ 0.85
CLN3-211ENST00000564091 ERCC3P19447 782 aa20.35■□□□□ 0.85
CLN3-211ENST00000564091 ADORA2AP29274 412 aa20.35■□□□□ 0.85
CLN3-211ENST00000564091 SAMD1Q6SPF0 538 aaPredicted RBP20.35■□□□□ 0.85
CLN3-211ENST00000564091 TDHQ8IZJ6 230 aa20.35■□□□□ 0.85
CLN3-211ENST00000564091 IGHA2P01877 340 aa20.34■□□□□ 0.85
CLN3-211ENST00000564091 DSG3P32926 999 aa20.34■□□□□ 0.85
CLN3-211ENST00000564091 ATN1P54259 1190 aaPredicted RBP20.34■□□□□ 0.85
CLN3-211ENST00000564091 MDM2Q00987 491 aaPredicted RBP20.34■□□□□ 0.85
CLN3-211ENST00000564091 ICA1Q05084 483 aa20.34■□□□□ 0.85
CLN3-211ENST00000564091 PLS1Q14651 629 aa20.34■□□□□ 0.85
CLN3-211ENST00000564091 LPAR1Q92633 364 aa20.34■□□□□ 0.85
CLN3-211ENST00000564091 HAUS7Q99871 368 aa20.34■□□□□ 0.85
CLN3-211ENST00000564091 ATP8A2Q9NTI2 1148 aa20.34■□□□□ 0.85
CLN3-211ENST00000564091 TMX2Q9Y320 296 aa20.34■□□□□ 0.85
CLN3-211ENST00000564091 USP17L12C9JPN9 530 aa20.33■□□□□ 0.85
CLN3-211ENST00000564091 USP17L21D6R901 530 aa20.33■□□□□ 0.85
CLN3-211ENST00000564091 STRNO43815 780 aa20.33■□□□□ 0.85
CLN3-211ENST00000564091 COBLO75128 1261 aa20.33■□□□□ 0.85
CLN3-211ENST00000564091 FLOT1O75955 427 aa20.33■□□□□ 0.85
CLN3-211ENST00000564091 CDK8P49336 464 aa20.33■□□□□ 0.85
CLN3-211ENST00000564091 C12orf60Q5U649 245 aa20.33■□□□□ 0.85
CLN3-211ENST00000564091 ATG4CQ96DT6 458 aa20.33■□□□□ 0.85
CLN3-211ENST00000564091 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.33■□□□□ 0.853e-6■■■■■ 36.1
CLN3-211ENST00000564091 ARHGEF10LQ9HCE6 1279 aa20.33■□□□□ 0.85
CLN3-211ENST00000564091 MSCO60682 206 aa20.32■□□□□ 0.84
CLN3-211ENST00000564091 CYBAP13498 195 aa20.32■□□□□ 0.84
CLN3-211ENST00000564091 LRIT3Q3SXY7 679 aa20.32■□□□□ 0.84
CLN3-211ENST00000564091 ANO1Q5XXA6 986 aa20.32■□□□□ 0.84
CLN3-211ENST00000564091 Q7L0L9 218 aa20.32■□□□□ 0.84
CLN3-211ENST00000564091 NCAPG2Q86XI2 1143 aa20.32■□□□□ 0.84
CLN3-211ENST00000564091 SHCBP1Q8NEM2 672 aa20.32■□□□□ 0.84
CLN3-211ENST00000564091 VCPKMTQ9H867 229 aa20.32■□□□□ 0.84
CLN3-211ENST00000564091 DDX60LQ5H9U9 1706 aaKnown RBP20.32■□□□□ 0.84
CLN3-211ENST00000564091 SMARCA5O60264 1052 aaPredicted RBP20.31■□□□□ 0.84
CLN3-211ENST00000564091 UBE3CQ15386 1083 aa20.31■□□□□ 0.84
CLN3-211ENST00000564091 PRAMEF19Q5SWL8 479 aa20.31■□□□□ 0.84
CLN3-211ENST00000564091 GJC2Q5T442 439 aaPredicted RBP20.31■□□□□ 0.84
CLN3-211ENST00000564091 OLFML2BQ68BL8 750 aa20.31■□□□□ 0.84
CLN3-211ENST00000564091 DEFB123Q8N688 67 aa20.31■□□□□ 0.84
CLN3-211ENST00000564091 MB21D1Q8N884 522 aa20.31■□□□□ 0.84
CLN3-211ENST00000564091 SLC17A8Q8NDX2 589 aa20.31■□□□□ 0.84
CLN3-211ENST00000564091 CCDC17Q96LX7 622 aa20.31■□□□□ 0.84
CLN3-211ENST00000564091 SLC4A4Q9Y6R1 1079 aa20.31■□□□□ 0.84
CLN3-211ENST00000564091 MYH1P12882 1939 aa20.31■□□□□ 0.84
CLN3-211ENST00000564091 ALPK3Q96L96 1907 aa20.3■□□□□ 0.84
CLN3-211ENST00000564091 DNAH12Q6ZR08 3092 aa20.3■□□□□ 0.84
CLN3-211ENST00000564091 DNM1LO00429 736 aa20.3■□□□□ 0.84
CLN3-211ENST00000564091 C16orf86Q6ZW13 317 aa20.3■□□□□ 0.84
CLN3-211ENST00000564091 AMOTL1Q8IY63 956 aa20.3■□□□□ 0.84
CLN3-211ENST00000564091 PUS7LQ9H0K6 701 aaKnown RBP20.3■□□□□ 0.84
CLN3-211ENST00000564091 SH2D4AQ9H788 454 aa20.3■□□□□ 0.84
CLN3-211ENST00000564091 WDR46O15213 610 aaKnown RBP20.29■□□□□ 0.84
CLN3-211ENST00000564091 MYCNP04198 464 aaPredicted RBP20.29■□□□□ 0.84
CLN3-211ENST00000564091 EEF2P13639 858 aaKnown RBP20.29■□□□□ 0.84
CLN3-211ENST00000564091 TMEM132BQ14DG7 1078 aa20.29■□□□□ 0.84
CLN3-211ENST00000564091 C20orf194Q5TEA3 1177 aa20.29■□□□□ 0.84
CLN3-211ENST00000564091 GPR153Q6NV75 609 aa20.29■□□□□ 0.84
CLN3-211ENST00000564091 CTR9Q6PD62 1173 aa20.29■□□□□ 0.84
CLN3-211ENST00000564091 CHMP4BQ9H444 224 aaKnown RBP20.29■□□□□ 0.84
CLN3-211ENST00000564091 MROH8Q9H579 483 aa20.29■□□□□ 0.84
CLN3-211ENST00000564091 FBXO28Q9NVF7 368 aa20.29■□□□□ 0.84
CLN3-211ENST00000564091 RCAN3Q9UKA8 241 aa20.29■□□□□ 0.84
CLN3-211ENST00000564091 DDRGK1Q96HY6 314 aa20.28■□□□□ 0.84
CLN3-211ENST00000564091 LRRCC1Q9C099 1032 aa20.28■□□□□ 0.84
CLN3-211ENST00000564091 SEPT4O43236 478 aa20.27■□□□□ 0.84
CLN3-211ENST00000564091 RAD21O60216 631 aa20.27■□□□□ 0.84
CLN3-211ENST00000564091 RTP1P59025 263 aa20.27■□□□□ 0.84
CLN3-211ENST00000564091 ARRDC4Q8NCT1 418 aa20.27■□□□□ 0.84
CLN3-211ENST00000564091 KANSL2Q9H9L4 492 aa20.27■□□□□ 0.84
CLN3-211ENST00000564091 SLC5A4Q9NY91 659 aa20.27■□□□□ 0.84
CLN3-211ENST00000564091 FCER1AP12319 257 aa20.26■□□□□ 0.83
CLN3-211ENST00000564091 ZSCAN25Q6NSZ9 544 aa20.26■□□□□ 0.83
CLN3-211ENST00000564091 ABRAQ8N0Z2 381 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms