RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 CHAMP1Q96JM3 812 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 TM6SF1Q9BZW5 370 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 ZHX1Q9UKY1 873 aaPredicted RBP10.49□□□□□ -0.73
VPS39-205ENST00000562258 KIF1AQ12756 1690 aa10.49□□□□□ -0.73
VPS39-205ENST00000562258 F5H6K3 240 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 CCT6AP40227 531 aaKnown RBP10.48□□□□□ -0.73
VPS39-205ENST00000562258 USP8P40818 1118 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 USP14P54578 494 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 CCNA1P78396 465 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 KLRC3Q07444 240 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 GPATCH4Q5T3I0 446 aaKnown RBP10.48□□□□□ -0.73
VPS39-205ENST00000562258 NLRX1Q86UT6 975 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 KCNG4Q8TDN1 519 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 SMARCE1Q969G3 411 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 GJB4Q9NTQ9 266 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 USP17L5A8MUK1 530 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 GCOM1H8Y6P7 765 aaPredicted RBP10.48□□□□□ -0.73
VPS39-205ENST00000562258 POLR2MP0CAP2 368 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 OSBPP22059 807 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 NOM1Q5C9Z4 860 aaKnown RBP10.48□□□□□ -0.73
VPS39-205ENST00000562258 CDC37L1Q7L3B6 337 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 ZKSCAN4Q969J2 545 aaPredicted RBP10.48□□□□□ -0.73
VPS39-205ENST00000562258 MRPL11Q9Y3B7 192 aaKnown RBP10.48□□□□□ -0.73
VPS39-205ENST00000562258 UTYO14607 1347 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 SCG2P13521 617 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 TTC38Q5R3I4 469 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 TMEM47Q9BQJ4 181 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 MED23Q9ULK4 1368 aa10.48□□□□□ -0.73
VPS39-205ENST00000562258 POTEB2H3BUK9 544 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 LETM1O95202 739 aaPredicted RBP10.47□□□□□ -0.73
VPS39-205ENST00000562258 ERCC3P19447 782 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 Q3C1V9 767 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 SEPT14Q6ZU15 432 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 CPLX3Q8WVH0 158 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 GTF3C6Q969F1 213 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 SNX21Q969T3 373 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 LZTS2Q9BRK4 669 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 OSBPL5Q9H0X9 879 aaPredicted RBP10.47□□□□□ -0.73
VPS39-205ENST00000562258 MAPK8IP1Q9UQF2 711 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 EIF2AK2P19525 551 aaKnown RBP10.47□□□□□ -0.73
VPS39-205ENST00000562258 KRI1Q8N9T8 703 aaKnown RBP10.47□□□□□ -0.73
VPS39-205ENST00000562258 GLIS2Q9BZE0 524 aaPredicted RBP10.47□□□□□ -0.73
VPS39-205ENST00000562258 AZI2Q9H6S1 392 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 SPC25Q9HBM1 224 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 RAVER2Q9HCJ3 691 aaKnown RBP10.47□□□□□ -0.73
VPS39-205ENST00000562258 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.47□□□□□ -0.73
VPS39-205ENST00000562258 BMP15O95972 392 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 CYP4A11Q02928 519 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 SCRN1Q12765 414 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 CCDC40Q4G0X9 1142 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 RILPL1Q5EBL4 403 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 UTP14CQ5TAP6 766 aaKnown RBP10.47□□□□□ -0.73
VPS39-205ENST00000562258 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS39-205ENST00000562258 MRPS27Q92552 414 aaKnown RBP10.47□□□□□ -0.73
VPS39-205ENST00000562258 SLC5A4Q9NY91 659 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 CCDC169A6NNP5 214 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 PRKCSHP14314 528 aaPredicted RBP10.47□□□□□ -0.73
VPS39-205ENST00000562258 PDE4DQ08499 809 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 TPH2Q8IWU9 490 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 DEF6Q9H4E7 631 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 LRWD1Q9UFC0 647 aa10.47□□□□□ -0.73
VPS39-205ENST00000562258 GAS7O60861 476 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 CASP7P55210 303 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 STX17P56962 302 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 IGBP1P78318 339 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 MTMR2Q13614 643 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 PPP2R5BQ15173 497 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 NECTIN1Q15223 517 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 PNMA8AQ86V59 439 aaPredicted RBP10.46□□□□□ -0.73
VPS39-205ENST00000562258 ZNF274Q96GC6 653 aaPredicted RBP10.46□□□□□ -0.73
VPS39-205ENST00000562258 SUGCTQ9HAC7 445 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 EXOC1Q9NV70 894 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 MYO9BQ13459 2157 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 FLT1P17948 1338 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 NEDD4P46934 1319 aa10.46□□□□□ -0.73
VPS39-205ENST00000562258 FAM13AO94988 1023 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 PLEKHA8P1O95397 391 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 NBPF12Q5TAG4 269 aaPredicted RBP10.46□□□□□ -0.74
VPS39-205ENST00000562258 PPFIBP1Q86W92 1011 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 BLIDQ8IZY5 108 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 NRXN3Q9Y4C0 1643 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 MTIF2P46199 727 aaKnown RBP10.46□□□□□ -0.74
VPS39-205ENST00000562258 KRT25Q7Z3Z0 450 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 FAM177A1Q8N128 213 aaPredicted RBP10.46□□□□□ -0.74
VPS39-205ENST00000562258 METTL13Q8N6R0 699 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 SNX29Q8TEQ0 813 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 INTS4Q96HW7 963 aaKnown RBP10.46□□□□□ -0.74
VPS39-205ENST00000562258 TSG101Q99816 390 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 ARID3AQ99856 593 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 MRVI1Q9Y6F6 885 aa10.46□□□□□ -0.74
VPS39-205ENST00000562258 ONECUT3O60422 494 aaPredicted RBP10.45□□□□□ -0.74
VPS39-205ENST00000562258 YY1P25490 414 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 TAF1CQ15572 869 aaPredicted RBP10.45□□□□□ -0.74
VPS39-205ENST00000562258 UBE2SQ16763 222 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 CYB5R4Q7L1T6 521 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 BRAPQ7Z569 592 aa10.45□□□□□ -0.74
VPS39-205ENST00000562258 BAZ2BQ9UIF8 2168 aaKnown RBP10.45□□□□□ -0.74
VPS39-205ENST00000562258 CD2BP2O95400 341 aaKnown RBP10.45□□□□□ -0.74
VPS39-205ENST00000562258 PCP11498 1178 aaKnown RBP10.45□□□□□ -0.74
VPS39-205ENST00000562258 CALCRLQ16602 461 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms