RNA–Protein interactions for RNA: ENST00000561940.1

SMG1-204, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 964 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-204ENST00000561940 PRDM7Q9NQW5 492 aa9.69□□□□□ -0.86
SMG1-204ENST00000561940 ST14Q9Y5Y6 855 aa9.69□□□□□ -0.86
SMG1-204ENST00000561940 PITPNM2Q9BZ72 1349 aa9.68□□□□□ -0.86
SMG1-204ENST00000561940 IRAK1P51617 712 aa9.68□□□□□ -0.86
SMG1-204ENST00000561940 CHMP4BP1P59074 171 aa9.68□□□□□ -0.86
SMG1-204ENST00000561940 AGBL5Q8NDL9 886 aa9.68□□□□□ -0.86
SMG1-204ENST00000561940 UBE2FQ969M7 185 aa9.68□□□□□ -0.86
SMG1-204ENST00000561940 ATG4CQ96DT6 458 aa9.68□□□□□ -0.86
SMG1-204ENST00000561940 SPATA32Q96LK8 384 aa9.68□□□□□ -0.86
SMG1-204ENST00000561940 SEMA3GQ9NS98 782 aa9.68□□□□□ -0.86
SMG1-204ENST00000561940 PPT2Q9UMR5 302 aa9.68□□□□□ -0.86
SMG1-204ENST00000561940 MRVI1Q9Y6F6 885 aa9.68□□□□□ -0.86
SMG1-204ENST00000561940 FAM86C2PA6NEL3 165 aa9.67□□□□□ -0.86
SMG1-204ENST00000561940 KIR3DL1P43629 444 aa9.67□□□□□ -0.86
SMG1-204ENST00000561940 CLCN7P51798 805 aa9.67□□□□□ -0.86
SMG1-204ENST00000561940 C22orf34Q6ZV56 151 aa9.67□□□□□ -0.86
SMG1-204ENST00000561940 PMFBP1Q8TBY8 1022 aa9.67□□□□□ -0.86
SMG1-204ENST00000561940 ASB11Q8WXH4 323 aa9.67□□□□□ -0.86
SMG1-204ENST00000561940 KREMEN1Q96MU8 473 aa9.67□□□□□ -0.86
SMG1-204ENST00000561940 FERD3LQ96RJ6 166 aa9.67□□□□□ -0.86
SMG1-204ENST00000561940 ZNF408Q9H9D4 720 aa9.67□□□□□ -0.86
SMG1-204ENST00000561940 RGS13O14921 159 aa9.66□□□□□ -0.86
SMG1-204ENST00000561940 UBOX5O94941 541 aa9.66□□□□□ -0.86
SMG1-204ENST00000561940 SSBP05455 408 aaKnown RBP eCLIP9.66□□□□□ -0.86
SMG1-204ENST00000561940 DPH6Q7L8W6 267 aa9.66□□□□□ -0.86
SMG1-204ENST00000561940 ARMC5Q96C12 935 aa9.66□□□□□ -0.86
SMG1-204ENST00000561940 LNPKQ9C0E8 428 aa9.66□□□□□ -0.86
SMG1-204ENST00000561940 ADGRE2Q9UHX3 823 aa9.66□□□□□ -0.86
SMG1-204ENST00000561940 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.65□□□□□ -0.86
SMG1-204ENST00000561940 STK10O94804 968 aaKnown RBP9.65□□□□□ -0.86
SMG1-204ENST00000561940 ETFBP38117 255 aa9.65□□□□□ -0.86
SMG1-204ENST00000561940 ZP2Q05996 745 aa9.65□□□□□ -0.86
SMG1-204ENST00000561940 ANGEL2Q5VTE6 544 aaKnown RBP9.65□□□□□ -0.86
SMG1-204ENST00000561940 NLRC3Q7RTR2 1065 aa9.65□□□□□ -0.86
SMG1-204ENST00000561940 PI4K2BQ8TCG2 481 aa9.65□□□□□ -0.86
SMG1-204ENST00000561940 TMEM40Q8WWA1 233 aa9.65□□□□□ -0.86
SMG1-204ENST00000561940 CNNM2Q9H8M5 875 aa9.65□□□□□ -0.86
SMG1-204ENST00000561940 FUT4P22083 530 aa9.64□□□□□ -0.87
SMG1-204ENST00000561940 ZNF792Q3KQV3 632 aa9.64□□□□□ -0.87
SMG1-204ENST00000561940 CDCP2Q5VXM1 449 aa9.64□□□□□ -0.87
SMG1-204ENST00000561940 DTWD2Q8NBA8 298 aa9.64□□□□□ -0.87
SMG1-204ENST00000561940 RNF141Q8WVD5 230 aa9.64□□□□□ -0.87
SMG1-204ENST00000561940 COX4I2Q96KJ9 171 aa9.64□□□□□ -0.87
SMG1-204ENST00000561940 ZNF512BQ96KM6 892 aaPredicted RBP9.64□□□□□ -0.87
SMG1-204ENST00000561940 CARS2Q9HA77 564 aaKnown RBP9.64□□□□□ -0.87
SMG1-204ENST00000561940 ADAMTS6Q9UKP5 1117 aa9.64□□□□□ -0.87
SMG1-204ENST00000561940 COL17A1Q9UMD9 1497 aaPredicted RBP9.64□□□□□ -0.87
SMG1-204ENST00000561940 NME1P15531 152 aaKnown RBP9.63□□□□□ -0.87
SMG1-204ENST00000561940 RBL2Q08999 1139 aa9.63□□□□□ -0.87
SMG1-204ENST00000561940 COL9A2Q14055 689 aaPredicted RBP9.63□□□□□ -0.87
SMG1-204ENST00000561940 LRRFIP1Q32MZ4 808 aaKnown RBP9.63□□□□□ -0.87
SMG1-204ENST00000561940 ANAPC16Q96DE5 110 aa9.63□□□□□ -0.87
SMG1-204ENST00000561940 SRRTQ9BXP5 876 aaKnown RBP9.63□□□□□ -0.87
SMG1-204ENST00000561940 SHROOM4Q9ULL8 1493 aa9.62□□□□□ -0.87
SMG1-204ENST00000561940 RNASE1P07998 156 aaKnown RBP9.62□□□□□ -0.87
SMG1-204ENST00000561940 TAL1P17542 331 aaPredicted RBP9.62□□□□□ -0.87
SMG1-204ENST00000561940 RUFY4Q6ZNE9 571 aa9.62□□□□□ -0.87
SMG1-204ENST00000561940 CPLX3Q8WVH0 158 aa9.62□□□□□ -0.87
SMG1-204ENST00000561940 SHDQ96IW2 340 aa9.62□□□□□ -0.87
SMG1-204ENST00000561940 SLC9A7Q96T83 725 aa9.62□□□□□ -0.87
SMG1-204ENST00000561940 DUSP15Q9H1R2 295 aaPredicted RBP9.62□□□□□ -0.87
SMG1-204ENST00000561940 MBNL3Q9NUK0 354 aaKnown RBP9.62□□□□□ -0.87
SMG1-204ENST00000561940 KCNH3Q9ULD8 1083 aa9.62□□□□□ -0.87
SMG1-204ENST00000561940 ZNRF3Q9ULT6 936 aa9.62□□□□□ -0.87
SMG1-204ENST00000561940 FAM169BQ8N8A8 192 aa9.61□□□□□ -0.87
SMG1-204ENST00000561940 PIWIL2Q8TC59 973 aaKnown RBP9.61□□□□□ -0.87
SMG1-204ENST00000561940 KRTAP9-2Q9BYQ4 174 aa9.61□□□□□ -0.87
SMG1-204ENST00000561940 STRIP2Q9ULQ0 834 aa9.61□□□□□ -0.87
SMG1-204ENST00000561940 TPP2P29144 1249 aaPredicted RBP9.6□□□□□ -0.87
SMG1-204ENST00000561940 CREG2Q8IUH2 290 aa9.6□□□□□ -0.87
SMG1-204ENST00000561940 TMEM192Q8IY95 271 aa9.6□□□□□ -0.87
SMG1-204ENST00000561940 VWCEQ96DN2 955 aa9.6□□□□□ -0.87
SMG1-204ENST00000561940 RC3H2Q9HBD1 1191 aaKnown RBP9.6□□□□□ -0.87
SMG1-204ENST00000561940 MEIS3P2A8K0S8 358 aa9.59□□□□□ -0.87
SMG1-204ENST00000561940 CCDC144BQ3MJ40 725 aa9.59□□□□□ -0.87
SMG1-204ENST00000561940 THAP5Q7Z6K1 395 aa9.59□□□□□ -0.87
SMG1-204ENST00000561940 HNRNPLLQ8WVV9 542 aaKnown RBP9.59□□□□□ -0.87
SMG1-204ENST00000561940 HIRIP3Q9BW71 556 aaPredicted RBP9.59□□□□□ -0.87
SMG1-204ENST00000561940 ASPNQ9BXN1 380 aa9.59□□□□□ -0.87
SMG1-204ENST00000561940 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.59□□□□□ -0.87
SMG1-204ENST00000561940 GPATCH2Q9NW75 528 aa9.59□□□□□ -0.87
SMG1-204ENST00000561940 SHISA3A0PJX4 238 aa9.58□□□□□ -0.88
SMG1-204ENST00000561940 CLEC3AO75596 197 aa9.58□□□□□ -0.88
SMG1-204ENST00000561940 ACRP10323 421 aa9.58□□□□□ -0.88
SMG1-204ENST00000561940 NBPF12Q5TAG4 269 aaPredicted RBP9.58□□□□□ -0.88
SMG1-204ENST00000561940 SLC23A3Q6PIS1 610 aa9.58□□□□□ -0.88
SMG1-204ENST00000561940 ANKS3Q6ZW76 656 aa9.58□□□□□ -0.88
SMG1-204ENST00000561940 CBLL1Q75N03 491 aa9.58□□□□□ -0.88
SMG1-204ENST00000561940 LRRN4CLQ8ND94 238 aa9.58□□□□□ -0.88
SMG1-204ENST00000561940 SLC6A18Q96N87 628 aa9.58□□□□□ -0.88
SMG1-204ENST00000561940 CRBNQ96SW2 442 aa9.58□□□□□ -0.88
SMG1-204ENST00000561940 KRTAP9-6A0A140TA67 174 aa9.57□□□□□ -0.88
SMG1-204ENST00000561940 TNFRSF10CO14798 259 aa9.57□□□□□ -0.88
SMG1-204ENST00000561940 SMAD7O15105 426 aaKnown RBP9.57□□□□□ -0.88
SMG1-204ENST00000561940 ESR1P03372 595 aa9.57□□□□□ -0.88
SMG1-204ENST00000561940 IMPDH2P12268 514 aa9.57□□□□□ -0.88
SMG1-204ENST00000561940 EIF6P56537 245 aaKnown RBP9.57□□□□□ -0.88
SMG1-204ENST00000561940 SNW1Q13573 536 aaKnown RBP9.57□□□□□ -0.88
SMG1-204ENST00000561940 CLEC16AQ2KHT3 1053 aa9.57□□□□□ -0.88
SMG1-204ENST00000561940 MCTP1Q6DN14 999 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms