RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 SF3A1Q15459 793 aaKnown RBP14.89□□□□□ -0.03
SNX1-211ENST00000560829 TPRNQ4KMQ1 711 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 PPP4R3BQ5MIZ7 849 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 RBM43Q6ZSC3 357 aaKnown RBP14.89□□□□□ -0.03
SNX1-211ENST00000560829 FOXP4Q8IVH2 680 aaPredicted RBP14.89□□□□□ -0.03
SNX1-211ENST00000560829 STAG2Q8N3U4 1231 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 AGBL3Q8NEM8 1001 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 UPF1Q92900 1129 aaKnown RBP eCLIP14.89□□□□□ -0.03
SNX1-211ENST00000560829 PRMT6Q96LA8 375 aaPredicted RBP14.89□□□□□ -0.03
SNX1-211ENST00000560829 FUCA2Q9BTY2 467 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 SPZ1Q9BXG8 430 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 RBSNQ9H1K0 784 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 NUP62CLQ9H1M0 184 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 TAOK3Q9H2K8 898 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 TSPY26PQ9H489 355 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 CLSTN2Q9H4D0 955 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 DNAJC18Q9H819 358 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.89□□□□□ -0.03
SNX1-211ENST00000560829 HDAC9Q9UKV0 1011 aa14.89□□□□□ -0.03
SNX1-211ENST00000560829 DDTLA6NHG4 134 aaPredicted RBP14.88□□□□□ -0.03
SNX1-211ENST00000560829 NR1I2O75469 434 aa14.88□□□□□ -0.03
SNX1-211ENST00000560829 NPY5RQ15761 445 aa14.88□□□□□ -0.03
SNX1-211ENST00000560829 CCAR1Q8IX12 1150 aaKnown RBP14.88□□□□□ -0.03
SNX1-211ENST00000560829 MTMR14Q8NCE2 650 aa14.88□□□□□ -0.03
SNX1-211ENST00000560829 ENGASEQ8NFI3 743 aa14.88□□□□□ -0.03
SNX1-211ENST00000560829 TDRD3Q9H7E2 651 aaKnown RBP14.88□□□□□ -0.03
SNX1-211ENST00000560829 SH3GLB2Q9NR46 395 aa14.88□□□□□ -0.03
SNX1-211ENST00000560829 MORC2Q9Y6X9 1032 aaPredicted RBP14.88□□□□□ -0.03
SNX1-211ENST00000560829 hCG_1642624A0A1W2PR95 340 aa14.87□□□□□ -0.03
SNX1-211ENST00000560829 SNHG28P0DPA3 235 aa14.87□□□□□ -0.03
SNX1-211ENST00000560829 KRT2P35908 639 aa14.87□□□□□ -0.03
SNX1-211ENST00000560829 SLC35G1Q2M3R5 365 aa14.87□□□□□ -0.03
SNX1-211ENST00000560829 TATDN1Q6P1N9 297 aa14.87□□□□□ -0.03
SNX1-211ENST00000560829 JMYQ8N9B5 988 aa14.87□□□□□ -0.03
SNX1-211ENST00000560829 OXER1Q8TDS5 423 aa14.87□□□□□ -0.03
SNX1-211ENST00000560829 MRPS27Q92552 414 aaKnown RBP14.87□□□□□ -0.03
SNX1-211ENST00000560829 TNFRSF25Q93038 417 aa14.87□□□□□ -0.03
SNX1-211ENST00000560829 LTBP3Q9NS15 1303 aa14.87□□□□□ -0.03
SNX1-211ENST00000560829 CYTH3O43739 400 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 TTLL1O95922 423 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 PARP1P09874 1014 aaKnown RBP14.86□□□□□ -0.03
SNX1-211ENST00000560829 PTGER2P43116 358 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 TOB1P50616 345 aaPredicted RBP14.86□□□□□ -0.03
SNX1-211ENST00000560829 FAM160A1Q05DH4 1040 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 TCP10Q12799 353 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 NR5A1Q13285 461 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 SNW1Q13573 536 aaKnown RBP14.86□□□□□ -0.03
SNX1-211ENST00000560829 AXDND1Q5T1B0 1012 aaPredicted RBP14.86□□□□□ -0.03
SNX1-211ENST00000560829 CCDC73Q6ZRK6 1079 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 OGFOD1Q8N543 542 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 GOLPH3LQ9H4A5 285 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 BRMS1Q9HCU9 246 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 KLRF2D3W0D1 207 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 NFKBIEO00221 500 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 MMP14P50281 582 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 CXCL9Q07325 125 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 MAP3K11Q16584 847 aa14.86□□□□□ -0.03
SNX1-211ENST00000560829 PDHBP11177 359 aa14.85□□□□□ -0.03
SNX1-211ENST00000560829 DLGAP5Q15398 846 aa14.85□□□□□ -0.03
SNX1-211ENST00000560829 FKBP1CQ5VVH2 108 aa14.85□□□□□ -0.03
SNX1-211ENST00000560829 FSIP1Q8NA03 581 aa14.85□□□□□ -0.03
SNX1-211ENST00000560829 PANK2Q9BZ23 570 aa14.85□□□□□ -0.03
SNX1-211ENST00000560829 TNMDQ9H2S6 317 aa14.85□□□□□ -0.03
SNX1-211ENST00000560829 TMOD2Q9NZR1 351 aa14.85□□□□□ -0.03
SNX1-211ENST00000560829 FAM237AA0A1B0GTK4 181 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 CMA1P23946 247 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 CALML3P27482 149 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 SPDYE2Q495Y8 402 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 ASPRV1Q53RT3 343 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 FMR1NBQ8N0W7 255 aaPredicted RBP14.84□□□□□ -0.03
SNX1-211ENST00000560829 ZBED3Q96IU2 234 aaPredicted RBP14.84□□□□□ -0.03
SNX1-211ENST00000560829 ZBTB12Q9Y330 459 aaPredicted RBP14.84□□□□□ -0.03
SNX1-211ENST00000560829 BRCA1P38398 1863 aaKnown RBP14.84□□□□□ -0.03
SNX1-211ENST00000560829 GOLGB1Q14789 3259 aaKnown RBP14.84□□□□□ -0.03
SNX1-211ENST00000560829 CTAGE5O15320 804 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 VEGFAP15692 232 aaPredicted RBP14.84□□□□□ -0.03
SNX1-211ENST00000560829 NLRP5P59047 1200 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 CERKLQ49MI3 558 aaPredicted RBP14.84□□□□□ -0.03
SNX1-211ENST00000560829 CIAPIN1Q6FI81 312 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 GALNT17Q6IS24 598 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 USP17L2Q6R6M4 530 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 ZSCAN29Q8IWY8 852 aaPredicted RBP14.84□□□□□ -0.03
SNX1-211ENST00000560829 FAM151AQ8WW52 585 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 JDP2Q8WYK2 163 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 MKL1Q969V6 931 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 CABP5Q9NP86 173 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 ZNF70Q9UC06 446 aaPredicted RBP14.84□□□□□ -0.03
SNX1-211ENST00000560829 CLIP2Q9UDT6 1046 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 SIPA1L1O43166 1804 aa14.84□□□□□ -0.03
SNX1-211ENST00000560829 GREB1LQ9C091 1923 aaPredicted RBP14.84□□□□□ -0.03
SNX1-211ENST00000560829 USP17L5A8MUK1 530 aa14.83□□□□□ -0.04
SNX1-211ENST00000560829 GOLGA8HP0CJ92 632 aa14.83□□□□□ -0.04
SNX1-211ENST00000560829 DAGLBQ8NCG7 672 aa14.83□□□□□ -0.04
SNX1-211ENST00000560829 CCDC148Q8NFR7 591 aa14.83□□□□□ -0.04
SNX1-211ENST00000560829 RIOX1Q9H6W3 641 aa14.83□□□□□ -0.04
SNX1-211ENST00000560829 BARHL2Q9NY43 387 aa14.83□□□□□ -0.04
SNX1-211ENST00000560829 NYAP2Q9P242 653 aa14.83□□□□□ -0.04
SNX1-211ENST00000560829 PPP1R1BQ9UD71 204 aaPredicted RBP14.83□□□□□ -0.04
SNX1-211ENST00000560829 CEP131Q9UPN4 1083 aa14.83□□□□□ -0.04
SNX1-211ENST00000560829 CUTAO60888 179 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms