RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 SRGAP2BP0DMP2 458 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 SKIP12755 728 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 ART3Q13508 389 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 WAPLQ7Z5K2 1190 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 NR1H4Q96RI1 486 aaPredicted RBP15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 TPCN1Q9ULQ1 816 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 MRFAP1Q9Y605 127 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 TSC1Q92574 1164 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 TTC1Q99614 292 aa15.2■□□□□ 0.02
CSPG4P12-202ENST00000559989 OCM2P0CE71 109 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 OCMP0CE72 109 aaPredicted RBP15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 FAM69CQ0P6D2 419 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 RCN2Q14257 317 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 HELLSQ9NRZ9 838 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 KRT19P08727 400 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 SAT1P21673 171 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 GLE1Q53GS7 698 aaKnown RBP15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 SCYL3Q8IZE3 742 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 ESYT1Q9BSJ8 1104 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 SAR1BQ9Y6B6 198 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 SYCE1LA8MT33 242 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 ZC3H12BQ5HYM0 836 aaKnown RBP15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 SRRM1Q8IYB3 904 aaKnown RBP15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 CCDC197Q8NCU1 140 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 TRIM58Q8NG06 486 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 IRAK4Q9NWZ3 460 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 KCNG1Q9UIX4 513 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 KRIT1O00522 736 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 GCNT3O95395 438 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 RPS6KC1Q96S38 1066 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 GRIN1Q05586 938 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 ZKSCAN8Q15776 578 aaPredicted RBP15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 GIPC2Q8TF65 315 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 MIS12Q9H081 205 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 ATF2P15336 505 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 KRT4P19013 534 aa15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 NBPF5PQ86XG9 351 aaPredicted RBP15.19■□□□□ 0.02
CSPG4P12-202ENST00000559989 POLR2BP30876 1174 aaKnown RBP15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 TSTA3Q13630 321 aaPredicted RBP15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 IFIH1Q9BYX4 1025 aaKnown RBP15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 ERICH3Q5RHP9 1530 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 F8W031 263 aaPredicted RBP15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 INHBAP08476 426 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 IFNA8P32881 189 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 PPP4R4Q6NUP7 873 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 MRPL44Q9H9J2 332 aaKnown RBP15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 HEXIM1O94992 359 aaKnown RBP15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 MAGEA1P43355 309 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 FBXW4P57775 412 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 RNF217Q8TC41 542 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 TAF11Q15544 211 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 LETM2Q2VYF4 491 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 CAPN9O14815 690 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 FANCCQ00597 558 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 SPDYE1Q8NFV5 336 aaPredicted RBP15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 EEF1GP26641 437 aaKnown RBP15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 GNL1P36915 607 aaPredicted RBP15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 LIG3P49916 1009 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 GJC2Q5T442 439 aaPredicted RBP15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 EFCAB13Q8IY85 973 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 TSC22D3Q99576 134 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 PAG1Q9NWQ8 432 aa15.18■□□□□ 0.02
CSPG4P12-202ENST00000559989 CARSP49589 748 aaKnown RBP15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 TRIM8Q9BZR9 551 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 NAIPQ13075 1403 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 FAM95CA0A1B0GW59 222 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 PSDA5PKW4 1024 aaPredicted RBP15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 TMEM247A6NEH6 219 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 CREB3O43889 395 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 TRIM37O94972 964 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 DCLK2Q8N568 766 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 NPHP3Q7Z494 1330 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 APBA1Q02410 837 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 ZNF174Q15697 407 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 PARD3BQ8TEW8 1205 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 KPNA2P52292 529 aaKnown RBP15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 TRMT10CQ7L0Y3 403 aaKnown RBP15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 ATP6V1E2Q96A05 226 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 PSMB7Q99436 277 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 NYXQ9GZU5 481 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 ZBTB12Q9Y330 459 aaPredicted RBP15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 HLA-DPA1P20036 260 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 A0A1B0GVL5 298 aa15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 PPP1R12AO14974 1030 aaPredicted RBP15.17■□□□□ 0.02
CSPG4P12-202ENST00000559989 ATP1A2P50993 1020 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 MLKLQ8NB16 471 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 BCAS4Q8TDM0 211 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 ZBTB3Q9H5J0 574 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 NR1I2O75469 434 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 SDSP20132 328 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 MYCT1Q8N699 235 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 TEX9Q8N6V9 391 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 F8W8V4 182 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 TRIML2Q8N7C3 387 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 LRRC37BQ96QE4 947 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 SETDB2Q96T68 719 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 SMYD2Q9NRG4 433 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 POLR2DO15514 142 aaKnown RBP15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 PYGBP11216 843 aa15.16■□□□□ 0.02
CSPG4P12-202ENST00000559989 NLRP12P59046 1061 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms