RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 DKK3Q9UBP4 350 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 CARD8Q9Y2G2 431 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 L3MBTL1Q9Y468 752 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 SLC30A1Q9Y6M5 507 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 NSD2O96028 1365 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 ST20-MTHFSA0A0A6YYL1 179 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 HTR3EA5X5Y0 456 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 TBKBP1A7MCY6 615 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 FIBPO43427 364 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 ZBED4O75132 1171 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 FLOT1O75955 427 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 CD97P48960 835 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 VSNL1P62760 191 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 GSTM4Q03013 218 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 STIM1Q13586 685 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 DEPTORQ8TB45 409 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 CGREF1Q99674 301 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 PRELID1Q9Y255 219 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 R3HDM2Q9Y2K5 976 aaKnown RBP9.43□□□□□ -0.9
USP3-211ENST00000559257 MYOM2P54296 1465 aa9.43□□□□□ -0.9
USP3-211ENST00000559257 LMTK2Q8IWU2 1503 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 MYPNQ86TC9 1320 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 A0A1B0GVL5 298 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 VWA3AA6NCI4 1184 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 BOLA2-SMG1P6H3BVE0 249 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 MGEA5O60502 916 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 USO1O60763 962 aaKnown RBP9.42□□□□□ -0.9
USP3-211ENST00000559257 EPB41P11171 864 aaKnown RBP9.42□□□□□ -0.9
USP3-211ENST00000559257 ALADP13716 330 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 APLP1P51693 650 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 CAMK2BQ13554 666 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 BCL2A1Q16548 175 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 ANKRD20A8PQ5CZ79 823 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 TMEM53Q6P2H8 277 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 Q6ZUG5 572 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 ZNF554Q86TJ5 538 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 TTC39CQ8N584 583 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 GABPB2Q8TAK5 448 aaPredicted RBP9.42□□□□□ -0.9
USP3-211ENST00000559257 ZNF473Q8WTR7 871 aaKnown RBP9.42□□□□□ -0.9
USP3-211ENST00000559257 COG1Q8WTW3 980 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 KIFAP3Q92845 792 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 ABHD8Q96I13 439 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 TTC14Q96N46 770 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 NACAP1Q9BZK3 213 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 DNAJC25Q9H1X3 360 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 TIMM22Q9Y584 194 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 ATP10BO94823 1461 aa9.42□□□□□ -0.9
USP3-211ENST00000559257 AKR1B10O60218 316 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 SSBP05455 408 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP3-211ENST00000559257 CLTAP09496 248 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 BDNFP23560 247 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 NEK4P51957 841 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 CTAG1AP78358 180 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 PLOD1Q02809 727 aaPredicted RBP9.41□□□□□ -0.9
USP3-211ENST00000559257 LMNB2Q03252 620 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 FAM69CQ0P6D2 419 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 SYT2Q8N9I0 419 aaPredicted RBP9.41□□□□□ -0.9
USP3-211ENST00000559257 TRPC4APQ8TEL6 797 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 SYTL4Q96C24 671 aaPredicted RBP9.41□□□□□ -0.9
USP3-211ENST00000559257 DDX27Q96GQ7 796 aaKnown RBP9.41□□□□□ -0.9
USP3-211ENST00000559257 RSPH9Q9H1X1 276 aaPredicted RBP9.41□□□□□ -0.9
USP3-211ENST00000559257 PIDD1Q9HB75 910 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 C6orf203Q9P0P8 240 aaPredicted RBP9.41□□□□□ -0.9
USP3-211ENST00000559257 CCDC162PA2VCL2 907 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 TRIM43BA6NCK2 446 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 TRIM64CA6NLI5 447 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 NDUFB5O43674 189 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 PEX14O75381 377 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 GSTA2P09210 222 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 CCND1P24385 295 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 MATR3P43243 847 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP3-211ENST00000559257 PMS2P54278 862 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 DMPKQ09013 629 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 ADAM9Q13443 819 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 BYSLQ13895 437 aaKnown RBP9.41□□□□□ -0.9
USP3-211ENST00000559257 SPDYCQ5MJ68 293 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 ADALQ6DHV7 355 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 POTEEQ6S8J3 1075 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 CEP128Q6ZU80 1094 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 LMNTD2Q8IXW0 634 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 STK11IPQ8N1F8 1099 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 ARHGAP18Q8N392 663 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 NCSTNQ92542 709 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 ATP6V0A1Q93050 837 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 DHX58Q96C10 678 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 CDC23Q9UJX2 597 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 ZNF777Q9ULD5 760 aaPredicted RBP9.41□□□□□ -0.9
USP3-211ENST00000559257 CEP131Q9UPN4 1083 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 SSX2IPQ9Y2D8 614 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 FAM135BQ49AJ0 1406 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 RNF17Q9BXT8 1623 aaKnown RBP9.41□□□□□ -0.9
USP3-211ENST00000559257 KIF24Q5T7B8 1368 aa9.41□□□□□ -0.9
USP3-211ENST00000559257 STX6O43752 255 aa9.4□□□□□ -0.9
USP3-211ENST00000559257 TOP1P11387 765 aaKnown RBP9.4□□□□□ -0.9
USP3-211ENST00000559257 PRKAR2BP31323 418 aa9.4□□□□□ -0.9
USP3-211ENST00000559257 STAT6P42226 847 aa9.4□□□□□ -0.9
USP3-211ENST00000559257 GNG11P61952 73 aa9.4□□□□□ -0.9
USP3-211ENST00000559257 PPIDQ08752 370 aaKnown RBP9.4□□□□□ -0.9
USP3-211ENST00000559257 STX1AQ16623 288 aa9.4□□□□□ -0.9
USP3-211ENST00000559257 MSL1Q68DK7 614 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms