RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 FTOQ9C0B1 505 aaKnown RBP eCLIP12.31□□□□□ -0.44
USP3-206ENST00000558157 MYO1AQ9UBC5 1043 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 CACNA1SQ13698 1873 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 AKAP11Q9UKA4 1901 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 SYF2O95926 243 aaKnown RBP12.31□□□□□ -0.44
USP3-206ENST00000558157 CMA1P23946 247 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 OLFM4Q6UX06 510 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 Q6ZUG5 572 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 DPF2Q92785 391 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 RFX7Q2KHR2 1363 aa12.31□□□□□ -0.44
USP3-206ENST00000558157 SHTN1A0MZ66 631 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 PTPDC1A2A3K4 754 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 WTIPA6NIX2 430 aaPredicted RBP12.3□□□□□ -0.44
USP3-206ENST00000558157 HOXA10P31260 410 aaPredicted RBP12.3□□□□□ -0.44
USP3-206ENST00000558157 PHKA1P46020 1223 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 LIG3P49916 1009 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 SCARF1Q14162 830 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 STK38Q15208 465 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 EGFL6Q8IUX8 553 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 AMOTL1Q8IY63 956 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP3-206ENST00000558157 FSD1Q9BTV5 496 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 LRRIQ3A6PVS8 624 aaPredicted RBP12.3□□□□□ -0.44
USP3-206ENST00000558157 ANKRD65E5RJM6 399 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 LRCH2Q5VUJ6 765 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 CCDC102BQ68D86 513 aa12.3□□□□□ -0.44
USP3-206ENST00000558157 PUF60Q9UHX1 559 aaKnown RBP12.3□□□□□ -0.44
USP3-206ENST00000558157 U3KPZ7 1027 aaPredicted RBP12.3□□□□□ -0.44
USP3-206ENST00000558157 A0A0D9SFI3 127 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 GOLIM4O00461 696 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 CHUKO15111 745 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 SPTLC2O15270 562 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 PDE6BP35913 854 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 COL9A3Q14050 684 aaPredicted RBP12.29□□□□□ -0.44
USP3-206ENST00000558157 EP400NLQ6ZTU2 488 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 B4GALNT4Q76KP1 1039 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 BRAPQ7Z569 592 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 FAM76AQ8TAV0 307 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 CRAMP1Q96RY5 1269 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 ANKRD2Q9GZV1 360 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 PAG1Q9NWQ8 432 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 KCNG1Q9UIX4 513 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 PHACTR2O75167 634 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 FSBPO95073 299 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 SRGNP10124 158 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 MCAMP43121 646 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 PPFIA1Q13136 1202 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 UBE4AQ14139 1066 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 NBPF20Q3BBV1 942 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 PI16Q6UXB8 463 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 ELOA2Q8IYF1 753 aaPredicted RBP12.29□□□□□ -0.44
USP3-206ENST00000558157 CCDC148Q8NFR7 591 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 AGXT2Q9BYV1 514 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 SUGCTQ9HAC7 445 aa12.29□□□□□ -0.44
USP3-206ENST00000558157 C10orf71Q711Q0 1435 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 TARSL2A2RTX5 802 aaKnown RBP12.28□□□□□ -0.44
USP3-206ENST00000558157 BIN1O00499 593 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 ARID4AP29374 1257 aaPredicted RBP12.28□□□□□ -0.44
USP3-206ENST00000558157 RDXP35241 583 aaKnown RBP12.28□□□□□ -0.44
USP3-206ENST00000558157 IGSF22Q8N9C0 903 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 SLC16A10Q8TF71 515 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 ZSWIM4Q9H7M6 989 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 HPCAL4Q9UM19 191 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 TTF2Q9UNY4 1162 aaKnown RBP12.28□□□□□ -0.44
USP3-206ENST00000558157 ADGRG1Q9Y653 693 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 TMEM232C9JQI7 657 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 NPR1P16066 1061 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 KLRK1P26718 216 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 ZAP70P43403 619 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 CCT5P48643 541 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 IRAK1P51617 712 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 FKBP4Q02790 459 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP3-206ENST00000558157 COG1Q8WTW3 980 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 MIEF2Q96C03 454 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 ZNF512BQ96KM6 892 aaPredicted RBP12.28□□□□□ -0.44
USP3-206ENST00000558157 MRPL44Q9H9J2 332 aaKnown RBP12.28□□□□□ -0.44
USP3-206ENST00000558157 INTS13Q9NVM9 706 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 LTBP1Q14766 1721 aa12.28□□□□□ -0.44
USP3-206ENST00000558157 FAM237AA0A1B0GTK4 181 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 PPEF1O14829 653 aaPredicted RBP12.27□□□□□ -0.44
USP3-206ENST00000558157 CTDNEP1O95476 244 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 ELF1P32519 619 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 ARHGAP25P42331 645 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 BCAMP50895 628 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 KARSQ15046 597 aaKnown RBP12.27□□□□□ -0.44
USP3-206ENST00000558157 WWC2Q6AWC2 1192 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 RASGRP2Q7LDG7 609 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 YTHDF3Q7Z739 585 aaKnown RBP12.27□□□□□ -0.44
USP3-206ENST00000558157 PDILTQ8N807 584 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 RPGRIP1Q96KN7 1286 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 NAPGQ99747 312 aaPredicted RBP12.27□□□□□ -0.44
USP3-206ENST00000558157 MCM8Q9UJA3 840 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 TAF6LQ9Y6J9 622 aa12.27□□□□□ -0.44
USP3-206ENST00000558157 MYH7P12883 1935 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 ZBTB7AO95365 584 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 RHOXF2BP0C7M4 288 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 UQCRFS1P1P0C7P4 283 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 GYG1P46976 350 aa12.27□□□□□ -0.45
USP3-206ENST00000558157 R3HDM1Q15032 1099 aaKnown RBP12.27□□□□□ -0.45
USP3-206ENST00000558157 PREPLQ4J6C6 727 aaPredicted RBP12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms