RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 CYP7A1P22680 504 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 ADORA2AP29274 412 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 SHMT1P34896 483 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 USP14P54578 494 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 SMAD3P84022 425 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 EVX2Q03828 476 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 ABCB5Q2M3G0 1257 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 FAM47AQ5JRC9 791 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 OLFML2BQ68BL8 750 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 ATF7IPQ6VMQ6 1270 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 ARHGAP45Q92619 1136 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 TRIM43Q96BQ3 446 aaPredicted RBP9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 MOV10L1Q9BXT6 1211 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 GPR108Q9NPR9 543 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 PRDM6Q9NQX0 595 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 SERPINB13Q9UIV8 391 aa9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 DBNLQ9UJU6 430 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-214ENST00000557507 A0A1W2PRG0 241 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 SEPT4O43236 478 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 COBLO75128 1261 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 IDH1O75874 414 aaKnown RBP9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 MYCNP04198 464 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 ITGB8P26012 769 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 USP5P45974 858 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 EPHB4P54760 987 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 LRRC41Q15345 812 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 CERKLQ49MI3 558 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 CCDC158Q5M9N0 1113 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 USP38Q8NB14 1042 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 ARRDC4Q8NCT1 418 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 FERMT2Q96AC1 680 aa9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 ZNF512BQ96KM6 892 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-214ENST00000557507 LRRC37A2A6NM11 1700 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 ERCC3P19447 782 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 ADCYAP1R1P41586 468 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 PLCD1P51178 756 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 POLA2Q14181 598 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 SEPT2Q15019 361 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 KIAA1755Q5JYT7 1200 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 PRAMEF19Q5SWL8 479 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 DPP9Q86TI2 863 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 MAGEB6Q8N7X4 407 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 SPATC1LQ9H0A9 340 aa9.97□□□□□ -0.81
CCDC88C-214ENST00000557507 BRWD1Q9NSI6 2320 aa9.96□□□□□ -0.81
CCDC88C-214ENST00000557507 TLE2Q04725 743 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 GABPAQ06546 454 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 OS9Q13438 667 aaPredicted RBP9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 C1orf53Q5VUE5 145 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 CLEC10AQ8IUN9 316 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 SHCBP1Q8NEM2 672 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 SSH3Q8TE77 659 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 CLUAP1Q96AJ1 413 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 MAML3Q96JK9 1138 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 RNPC3Q96LT9 517 aaKnown RBP9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 YTHDC1Q96MU7 727 aaKnown RBP9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 RIOK1Q9BRS2 568 aaKnown RBP9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 TANGO6Q9C0B7 1094 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 CCDC8Q9H0W5 538 aaPredicted RBP9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 ANTXR1Q9H6X2 564 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 C1orf115Q9H7X2 142 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 CABP5Q9NP86 173 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 PHF24Q9UPV7 400 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 ROBO3Q96MS0 1386 aa9.96□□□□□ -0.82
CCDC88C-214ENST00000557507 LCTP09848 1927 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 TMEM265A0A087WTH1 108 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 STRNO43815 780 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 IGSF3O75054 1194 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 CLTBP09497 229 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 COG2Q14746 738 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 GRIN2CQ14957 1233 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 TTC6Q86TZ1 520 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 SLC44A5Q8NCS7 719 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 LENG1Q96BZ8 264 aaPredicted RBP9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 EAF2Q96CJ1 260 aaPredicted RBP9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 ATG4CQ96DT6 458 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 CHD9Q3L8U1 2897 aa9.95□□□□□ -0.82
CCDC88C-214ENST00000557507 PRRC2BQ5JSZ5 2229 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 SCN5AQ14524 2016 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 KIAA0355O15063 1070 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 PQBP1O60828 265 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 SURF6O75683 361 aaKnown RBP9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 BCAR3O75815 825 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 PGK1P00558 417 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 DNAJB2P25686 324 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 DSG3P32926 999 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 PLS1Q14651 629 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 NCAPG2Q86XI2 1143 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 CERS3Q8IU89 383 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 TMEM57Q8N5G2 664 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 FRAT1Q92837 279 aaPredicted RBP9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 XPNPEP3Q9NQH7 507 aa9.94□□□□□ -0.82
CCDC88C-214ENST00000557507 REV3LO60673 3130 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 CHD7Q9P2D1 2997 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 A0A1W2PQ45 241 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 A0A1W2PQY0 241 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 MPHOSPH10O00566 681 aaKnown RBP9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 FLOT1O75955 427 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 CYP2D6P10635 497 aa9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 TAL1P17542 331 aaPredicted RBP9.93□□□□□ -0.82
CCDC88C-214ENST00000557507 ATP8B2P98198 1209 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 194.3 ms