RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 EPHX3Q9H6B9 360 aa15.18■□□□□ 0.02
SHMT2-230ENST00000557427 ZBTB40Q9NUA8 1239 aa15.18■□□□□ 0.02
SHMT2-230ENST00000557427 BTBD7Q9P203 1132 aa15.18■□□□□ 0.02
SHMT2-230ENST00000557427 HERC5Q9UII4 1024 aaKnown RBP15.18■□□□□ 0.02
SHMT2-230ENST00000557427 CLTBP09497 229 aa15.17■□□□□ 0.02
SHMT2-230ENST00000557427 FPGSQ05932 587 aa15.17■□□□□ 0.02
SHMT2-230ENST00000557427 PRAMEF19Q5SWL8 479 aa15.17■□□□□ 0.02
SHMT2-230ENST00000557427 WDR78Q5VTH9 848 aa15.17■□□□□ 0.02
SHMT2-230ENST00000557427 CWC22Q9HCG8 908 aaKnown RBP15.17■□□□□ 0.02
SHMT2-230ENST00000557427 SEPT4O43236 478 aa15.16■□□□□ 0.02
SHMT2-230ENST00000557427 GLRX3O76003 335 aaKnown RBP15.16■□□□□ 0.02
SHMT2-230ENST00000557427 GDF11O95390 407 aa15.16■□□□□ 0.02
SHMT2-230ENST00000557427 FAM47AQ5JRC9 791 aa15.16■□□□□ 0.02
SHMT2-230ENST00000557427 C16orf59Q7L2K0 433 aa15.16■□□□□ 0.02
SHMT2-230ENST00000557427 SKAP1Q86WV1 359 aa15.16■□□□□ 0.02
SHMT2-230ENST00000557427 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.16■□□□□ 0.023e-9■□□□□ 10
SHMT2-230ENST00000557427 PI4KBQ9UBF8 816 aa15.16■□□□□ 0.02
SHMT2-230ENST00000557427 PIEZO1Q92508 2521 aa15.16■□□□□ 0.02
SHMT2-230ENST00000557427 PLXNA1Q9UIW2 1896 aa15.16■□□□□ 0.02
SHMT2-230ENST00000557427 PDS5AQ29RF7 1337 aaKnown RBP15.16■□□□□ 0.02
SHMT2-230ENST00000557427 CHD7Q9P2D1 2997 aa15.15■□□□□ 0.02
SHMT2-230ENST00000557427 RAG1P15918 1043 aa15.15■□□□□ 0.02
SHMT2-230ENST00000557427 CCNA1P78396 465 aa15.15■□□□□ 0.02
SHMT2-230ENST00000557427 SPTY2D1Q68D10 685 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-230ENST00000557427 CEP85Q6P2H3 762 aa15.15■□□□□ 0.02
SHMT2-230ENST00000557427 METTL16Q86W50 562 aaKnown RBP15.15■□□□□ 0.02
SHMT2-230ENST00000557427 NSUN4Q96CB9 384 aaKnown RBP15.15■□□□□ 0.02
SHMT2-230ENST00000557427 ZBTB21Q9ULJ3 1066 aa15.15■□□□□ 0.02
SHMT2-230ENST00000557427 PHF24Q9UPV7 400 aa15.15■□□□□ 0.02
SHMT2-230ENST00000557427 TFF2Q03403 129 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 FAAP100Q0VG06 881 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 RASIP1Q5U651 963 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 OLFML2BQ68BL8 750 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 USP17L2Q6R6M4 530 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 CATSPERGQ6ZRH7 1159 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 TBC1D9Q6ZT07 1266 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 ERICH6Q7L0X2 663 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 ALYREFQ86V81 257 aaKnown RBP15.14■□□□□ 0.01
SHMT2-230ENST00000557427 SH3RF3Q8TEJ3 882 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-230ENST00000557427 C12orf42Q96LP6 360 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 BCL11AQ9H165 835 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 CXXC1Q9P0U4 656 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-230ENST00000557427 HMG20BQ9P0W2 317 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 HCN4Q9Y3Q4 1203 aa15.14■□□□□ 0.01
SHMT2-230ENST00000557427 USP17L15C9J2P7 530 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 USP17L13C9JLJ4 530 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 USP17L11C9JVI0 530 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 USP17L18D6R9N7 530 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 USP17L22D6RA61 530 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 USP17L17D6RBQ6 530 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 USP17L19D6RCP7 530 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 USP17L20D6RJB6 530 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 PQBP1O60828 265 aaKnown RBP15.13■□□□□ 0.01
SHMT2-230ENST00000557427 COBLO75128 1261 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 MAP4K4O95819 1239 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-230ENST00000557427 IGFBP4P22692 258 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 KCNQ1P51787 676 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 USP17L24Q0WX57 530 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 ZYXQ15942 572 aaKnown RBP15.13■□□□□ 0.01
SHMT2-230ENST00000557427 TNNI3KQ59H18 835 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 PI16Q6UXB8 463 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 TEX11Q8IYF3 940 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 SPATA5Q8NB90 893 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 IL27Q8NEV9 243 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 C11orf16Q9NQ32 467 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 SNRKQ9NRH2 765 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 NOP58Q9Y2X3 529 aaKnown RBP15.13■□□□□ 0.01
SHMT2-230ENST00000557427 IVNS1ABPQ9Y6Y0 642 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 FPGT-TNNI3KV9GXZ4 949 aa15.13■□□□□ 0.01
SHMT2-230ENST00000557427 ADORA2AP29274 412 aa15.12■□□□□ 0.01
SHMT2-230ENST00000557427 ANP32AP39687 249 aaKnown RBP15.12■□□□□ 0.01
SHMT2-230ENST00000557427 CCDC158Q5M9N0 1113 aa15.12■□□□□ 0.01
SHMT2-230ENST00000557427 TTC39AQ5SRH9 613 aa15.12■□□□□ 0.01
SHMT2-230ENST00000557427 TMEM240Q5SV17 173 aa15.12■□□□□ 0.01
SHMT2-230ENST00000557427 LBX2Q6XYB7 198 aa15.12■□□□□ 0.01
SHMT2-230ENST00000557427 DPP9Q86TI2 863 aa15.12■□□□□ 0.01
SHMT2-230ENST00000557427 KHSRPQ92945 711 aaKnown RBP eCLIP15.12■□□□□ 0.01
SHMT2-230ENST00000557427 DBNDD2Q9BQY9 259 aa15.12■□□□□ 0.01
SHMT2-230ENST00000557427 CCDC8Q9H0W5 538 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-230ENST00000557427 GPR108Q9NPR9 543 aa15.12■□□□□ 0.01
SHMT2-230ENST00000557427 TMEM39AQ9NV64 488 aa15.12■□□□□ 0.01
SHMT2-230ENST00000557427 EXOC6BQ9Y2D4 811 aa15.12■□□□□ 0.01
SHMT2-230ENST00000557427 SMCHD1A6NHR9 2005 aa15.11■□□□□ 0.01
SHMT2-230ENST00000557427 MUC6Q6W4X9 2439 aa15.11■□□□□ 0.01
SHMT2-230ENST00000557427 SPDYE16A6NNV3 312 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-230ENST00000557427 APBB1O00213 710 aa15.11■□□□□ 0.01
SHMT2-230ENST00000557427 CCDC129Q6ZRS4 1044 aa15.11■□□□□ 0.01
SHMT2-230ENST00000557427 FOXP4Q8IVH2 680 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-230ENST00000557427 SMC5Q8IY18 1101 aa15.11■□□□□ 0.01
SHMT2-230ENST00000557427 DHX36Q9H2U1 1008 aaKnown RBP15.11■□□□□ 0.01
SHMT2-230ENST00000557427 RAI14Q9P0K7 980 aa15.11■□□□□ 0.01
SHMT2-230ENST00000557427 A0A1W2PQ45 241 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-230ENST00000557427 A0A1W2PQY0 241 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 PGK1P00558 417 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 TIMP1P01033 207 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 LDHCP07864 332 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 UQCRFS1P1P0C7P4 283 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 MCAMP43121 646 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 C8orf34Q49A92 452 aa15.1■□□□□ 0.01
SHMT2-230ENST00000557427 ANKRD33Q7Z3H0 272 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms