RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 FEZ1Q99689 392 aa11.4□□□□□ -0.58
TMEM260-213ENST00000556929 WDR18Q9BV38 432 aa11.4□□□□□ -0.58
TMEM260-213ENST00000556929 LY9Q9HBG7 655 aa11.4□□□□□ -0.58
TMEM260-213ENST00000556929 SYNPO2Q9UMS6 1093 aa11.4□□□□□ -0.58
TMEM260-213ENST00000556929 ZHX2Q9Y6X8 837 aa11.4□□□□□ -0.58
TMEM260-213ENST00000556929 SPDYE5A6NIY4 337 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 USP17L10C9JJH3 530 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 COL9A3Q14050 684 aaPredicted RBP11.39□□□□□ -0.59
TMEM260-213ENST00000556929 RCSD1Q6JBY9 416 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 CATIPQ7Z7H3 387 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 SGMS1Q86VZ5 419 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 ZNF579Q8NAF0 562 aaKnown RBP11.39□□□□□ -0.59
TMEM260-213ENST00000556929 ZNF280CQ8ND82 737 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 PNMA1Q8ND90 353 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 TMEM47Q9BQJ4 181 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 GOPCQ9HD26 462 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 ABT1Q9ULW3 272 aaKnown RBP11.39□□□□□ -0.59
TMEM260-213ENST00000556929 TMX2Q9Y320 296 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 SLC12A7Q9Y666 1083 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 TLL2Q9Y6L7 1015 aa11.39□□□□□ -0.59
TMEM260-213ENST00000556929 KLF18A0A0U1RQI7 1052 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 C19orf81C9J6K1 198 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 CALM1P0DP23 149 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 CALM2P0DP24 149 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 CALM3P0DP25 149 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 APLP1P51693 650 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 USP14P54578 494 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 APOBRQ0VD83 1088 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 PPIL2Q13356 520 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 TOB2Q14106 344 aaPredicted RBP11.38□□□□□ -0.59
TMEM260-213ENST00000556929 SAPCD2Q86UD0 394 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 CCDC84Q86UT8 332 aaPredicted RBP11.38□□□□□ -0.59
TMEM260-213ENST00000556929 CLEC10AQ8IUN9 316 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 OPTNQ96CV9 577 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 OTUD5Q96G74 571 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 CLMNQ96JQ2 1002 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 ZSCAN31Q96LW9 406 aaPredicted RBP11.38□□□□□ -0.59
TMEM260-213ENST00000556929 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.38□□□□□ -0.59
TMEM260-213ENST00000556929 NAP1L2Q9ULW6 460 aaPredicted RBP11.38□□□□□ -0.59
TMEM260-213ENST00000556929 AFG3L2Q9Y4W6 797 aa11.38□□□□□ -0.59
TMEM260-213ENST00000556929 LOC285556D6RIA3 1793 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 CXCL11O14625 94 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 ZBTB43O43298 467 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 RAD21O60216 631 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 DDAH1O94760 285 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 ECE1P42892 770 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 ZNF157P51786 506 aaPredicted RBP11.37□□□□□ -0.59
TMEM260-213ENST00000556929 RCAN1P53805 252 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 BACE1P56817 501 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 SPP2Q13103 211 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 PPP2R5BQ15173 497 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 RGMBQ6NW40 437 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 USP17L2Q6R6M4 530 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 NOL8Q76FK4 1167 aaKnown RBP11.37□□□□□ -0.59
TMEM260-213ENST00000556929 SIAH1Q8IUQ4 282 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 ZNF654Q8IZM8 581 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 LRRC47Q8N1G4 583 aaKnown RBP11.37□□□□□ -0.59
TMEM260-213ENST00000556929 GMCL1P1Q8NEA9 526 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 ACER1Q8TDN7 264 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 CHMP4CQ96CF2 233 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 ZNF274Q96GC6 653 aaPredicted RBP11.37□□□□□ -0.59
TMEM260-213ENST00000556929 HHIPL1Q96JK4 782 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 KIAA1683Q9H0B3 1180 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 VCPKMTQ9H867 229 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 GPHNQ9NQX3 736 aaPredicted RBP11.37□□□□□ -0.59
TMEM260-213ENST00000556929 LIMCH1Q9UPQ0 1083 aa11.37□□□□□ -0.59
TMEM260-213ENST00000556929 A0A1W2PRG0 241 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 TRIM75PA6NK02 468 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 F5H6K3 240 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 ZBTB48P10074 688 aaPredicted RBP11.36□□□□□ -0.59
TMEM260-213ENST00000556929 EVCP57679 992 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 KLRC3Q07444 240 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 ZYXQ15942 572 aaKnown RBP11.36□□□□□ -0.59
TMEM260-213ENST00000556929 SLFN13Q68D06 897 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 APOA5Q6Q788 366 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 HSCBQ8IWL3 235 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 CTCFLQ8NI51 663 aaPredicted RBP11.36□□□□□ -0.59
TMEM260-213ENST00000556929 NUP133Q8WUM0 1156 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 DCAF4Q8WV16 495 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 LPAR1Q92633 364 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 SNX21Q969T3 373 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 CCDC102AQ96A19 550 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 WNK4Q96J92 1243 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 MAP3K14Q99558 947 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 SENP2Q9HC62 589 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 TMOD4Q9NZQ9 345 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 BRPF3Q9ULD4 1205 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 MTMR7Q9Y216 660 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 MYH6P13533 1939 aa11.36□□□□□ -0.59
TMEM260-213ENST00000556929 CCDC196A0A1B0GTZ2 297 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 GOLGA8BA8MQT2 603 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 IRF6O14896 467 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 PDIA3P30101 505 aaKnown RBP11.35□□□□□ -0.59
TMEM260-213ENST00000556929 KIF5BP33176 963 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 ANP32AP39687 249 aaKnown RBP11.35□□□□□ -0.59
TMEM260-213ENST00000556929 METAP2P50579 478 aaKnown RBP eCLIP11.35□□□□□ -0.59
TMEM260-213ENST00000556929 TROAPQ12815 778 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 SNAPC2Q13487 334 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 MTMR2Q13614 643 aa11.35□□□□□ -0.59
TMEM260-213ENST00000556929 BECN1Q14457 450 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms