RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 DHRS1Q96LJ7 313 aa8.63□□□□□ -1.03
LINC00643-204ENST00000555934 KREMEN1Q96MU8 473 aa8.63□□□□□ -1.03
LINC00643-204ENST00000555934 MKRN2Q9H000 416 aaKnown RBP8.63□□□□□ -1.03
LINC00643-204ENST00000555934 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.63□□□□□ -1.03
LINC00643-204ENST00000555934 FAM170BA6NMN3 283 aa8.62□□□□□ -1.03
LINC00643-204ENST00000555934 EOMESO95936 686 aa8.62□□□□□ -1.03
LINC00643-204ENST00000555934 DCAF15Q66K64 600 aa8.62□□□□□ -1.03
LINC00643-204ENST00000555934 GATA6Q92908 595 aa8.62□□□□□ -1.03
LINC00643-204ENST00000555934 SMARCA5O60264 1052 aaPredicted RBP8.61□□□□□ -1.03
LINC00643-204ENST00000555934 LRRN2O75325 713 aa8.61□□□□□ -1.03
LINC00643-204ENST00000555934 CBX7O95931 251 aa8.61□□□□□ -1.03
LINC00643-204ENST00000555934 AXDND1Q5T1B0 1012 aaPredicted RBP8.61□□□□□ -1.03
LINC00643-204ENST00000555934 ZAR1Q86SH2 424 aa8.61□□□□□ -1.03
LINC00643-204ENST00000555934 GIMAP7Q8NHV1 300 aa8.61□□□□□ -1.03
LINC00643-204ENST00000555934 MSRB2Q9Y3D2 182 aa8.61□□□□□ -1.03
LINC00643-204ENST00000555934 PDPK1O15530 556 aa8.6□□□□□ -1.03
LINC00643-204ENST00000555934 ETV3P41162 512 aa8.6□□□□□ -1.03
LINC00643-204ENST00000555934 NCAPHQ15003 741 aa8.6□□□□□ -1.03
LINC00643-204ENST00000555934 NBPF12Q5TAG4 269 aaPredicted RBP8.6□□□□□ -1.03
LINC00643-204ENST00000555934 ZNF765Q7L2R6 523 aa8.6□□□□□ -1.03
LINC00643-204ENST00000555934 MKL1Q969V6 931 aa8.6□□□□□ -1.03
LINC00643-204ENST00000555934 DNAJC7Q99615 494 aa8.6□□□□□ -1.03
LINC00643-204ENST00000555934 PFDN2Q9UHV9 154 aa8.6□□□□□ -1.03
LINC00643-204ENST00000555934 COL17A1Q9UMD9 1497 aaPredicted RBP8.59□□□□□ -1.03
LINC00643-204ENST00000555934 KRTAP9-6A0A140TA67 174 aa8.59□□□□□ -1.03
LINC00643-204ENST00000555934 F13BP05160 661 aa8.59□□□□□ -1.03
LINC00643-204ENST00000555934 FSTP19883 344 aa8.59□□□□□ -1.03
LINC00643-204ENST00000555934 IFRD2Q12894 506 aaPredicted RBP8.59□□□□□ -1.03
LINC00643-204ENST00000555934 BBS9Q3SYG4 887 aa8.59□□□□□ -1.03
LINC00643-204ENST00000555934 RNF43Q68DV7 783 aa8.59□□□□□ -1.03
LINC00643-204ENST00000555934 OGFOD3Q6PK18 319 aa8.59□□□□□ -1.03
LINC00643-204ENST00000555934 NOP9Q86U38 636 aaKnown RBP8.59□□□□□ -1.03
LINC00643-204ENST00000555934 PPP1R14AQ96A00 147 aa8.59□□□□□ -1.03
LINC00643-204ENST00000555934 FGD4Q96M96 766 aa8.59□□□□□ -1.03
LINC00643-204ENST00000555934 CCDC113Q9H0I3 377 aa8.59□□□□□ -1.03
LINC00643-204ENST00000555934 SEMA6BQ9H3T3 888 aa8.59□□□□□ -1.03
LINC00643-204ENST00000555934 PRDM5Q9NQX1 630 aaPredicted RBP8.59□□□□□ -1.03
LINC00643-204ENST00000555934 SUSD5O60279 629 aa8.58□□□□□ -1.04
LINC00643-204ENST00000555934 EPHX1P07099 455 aa8.58□□□□□ -1.04
LINC00643-204ENST00000555934 MTERF2Q49AM1 385 aa8.58□□□□□ -1.04
LINC00643-204ENST00000555934 SFRP5Q5T4F7 317 aa8.58□□□□□ -1.04
LINC00643-204ENST00000555934 RNF141Q8WVD5 230 aa8.58□□□□□ -1.04
LINC00643-204ENST00000555934 HEXIM2Q96MH2 286 aaKnown RBP8.58□□□□□ -1.04
LINC00643-204ENST00000555934 FBXL21Q9UKT6 434 aa8.58□□□□□ -1.04
LINC00643-204ENST00000555934 PRR33A8MZF0 331 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 WDR64B1ANS9 1081 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 GSC2O15499 205 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 IGLV1-40P01703 118 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 CYP7A1P22680 504 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 RNF4P78317 190 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 NFIAQ12857 509 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 SNW1Q13573 536 aaKnown RBP8.57□□□□□ -1.04
LINC00643-204ENST00000555934 HEATR6Q6AI08 1181 aaKnown RBP8.57□□□□□ -1.04
LINC00643-204ENST00000555934 ZNF746Q6NUN9 644 aaPredicted RBP8.57□□□□□ -1.04
LINC00643-204ENST00000555934 SPATC1Q76KD6 591 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 EEPD1Q7L9B9 569 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 JAZF1Q86VZ6 243 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 VWCEQ96DN2 955 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 HAUS7Q99871 368 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 DBNDD2Q9BQY9 259 aa8.57□□□□□ -1.04
LINC00643-204ENST00000555934 AUHQ13825 339 aaKnown RBP8.56□□□□□ -1.04
LINC00643-204ENST00000555934 RASGRF1Q13972 1273 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 SV2CQ496J9 727 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 CYP27C1Q4G0S4 372 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 PRSS36Q5K4E3 855 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 FAM214BQ7L5A3 538 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 ADAT2Q7Z6V5 191 aaKnown RBP8.56□□□□□ -1.04
LINC00643-204ENST00000555934 FAM181AQ8N9Y4 354 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 SHKBP1Q8TBC3 707 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 LGR4Q9BXB1 951 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 ASPNQ9BXN1 380 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 LRRC4CQ9HCJ2 640 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 ZNF451Q9Y4E5 1061 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 MRPL42Q9Y6G3 142 aaKnown RBP8.56□□□□□ -1.04
LINC00643-204ENST00000555934 U3KQE9 123 aa8.56□□□□□ -1.04
LINC00643-204ENST00000555934 CBFA2T2O43439 604 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 DIAPH1O60610 1272 aaKnown RBP8.55□□□□□ -1.04
LINC00643-204ENST00000555934 DUSP27Q5VZP5 1158 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 ARHGAP27Q6ZUM4 889 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 C7orf61Q8IZ16 206 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 LILRB2Q8N423 598 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 ADCY4Q8NFM4 1077 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 SMARCC1Q92922 1105 aaPredicted RBP8.55□□□□□ -1.04
LINC00643-204ENST00000555934 Q96M66 194 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 OSBPL1AQ9BXW6 950 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 ATG3Q9NT62 314 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 APEX2Q9UBZ4 518 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 SUSD2Q9UGT4 822 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 GTF2IRD1Q9UHL9 959 aa8.55□□□□□ -1.04
LINC00643-204ENST00000555934 TMA7Q9Y2S6 64 aaKnown RBP8.55□□□□□ -1.04
LINC00643-204ENST00000555934 SHOXO15266 292 aa8.54□□□□□ -1.04
LINC00643-204ENST00000555934 ITIH2P19823 946 aa8.54□□□□□ -1.04
LINC00643-204ENST00000555934 NBPF9Q3BBW0 867 aa8.54□□□□□ -1.04
LINC00643-204ENST00000555934 SLC10A6Q3KNW5 377 aa8.54□□□□□ -1.04
LINC00643-204ENST00000555934 SLC51AQ86UW1 340 aa8.54□□□□□ -1.04
LINC00643-204ENST00000555934 BRF1Q92994 677 aa8.54□□□□□ -1.04
LINC00643-204ENST00000555934 FBXL18Q96ME1 805 aa8.54□□□□□ -1.04
LINC00643-204ENST00000555934 PRDM14Q9GZV8 571 aa8.54□□□□□ -1.04
LINC00643-204ENST00000555934 KANSL2Q9H9L4 492 aa8.54□□□□□ -1.04
LINC00643-204ENST00000555934 SUGT1Q9Y2Z0 365 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms