RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 XPCQ01831 940 aaPredicted RBP8.7□□□□□ -1.02
VRK1-205ENST00000555402 NR0B2Q15466 257 aa8.7□□□□□ -1.02
VRK1-205ENST00000555402 MRPL41Q8IXM3 137 aaKnown RBP8.7□□□□□ -1.02
VRK1-205ENST00000555402 INTS4Q96HW7 963 aaKnown RBP8.7□□□□□ -1.02
VRK1-205ENST00000555402 SGPP1Q9BX95 441 aa8.7□□□□□ -1.02
VRK1-205ENST00000555402 TRIM13O60858 407 aa8.69□□□□□ -1.02
VRK1-205ENST00000555402 GPR62Q9BZJ7 368 aa8.69□□□□□ -1.02
VRK1-205ENST00000555402 GPATCH2Q9NW75 528 aa8.69□□□□□ -1.02
VRK1-205ENST00000555402 TACC3Q9Y6A5 838 aa8.69□□□□□ -1.02
VRK1-205ENST00000555402 SLC6A19Q695T7 634 aa8.68□□□□□ -1.02
VRK1-205ENST00000555402 SV2BQ7L1I2 683 aa8.68□□□□□ -1.02
VRK1-205ENST00000555402 TSPYL5Q86VY4 417 aaPredicted RBP8.68□□□□□ -1.02
VRK1-205ENST00000555402 DNAJB8Q8NHS0 232 aa8.68□□□□□ -1.02
VRK1-205ENST00000555402 DHX38Q92620 1227 aaKnown RBP8.68□□□□□ -1.02
VRK1-205ENST00000555402 RFXAPO00287 272 aa8.67□□□□□ -1.02
VRK1-205ENST00000555402 PRPF40AO75400 957 aaKnown RBP8.67□□□□□ -1.02
VRK1-205ENST00000555402 PDE6BP35913 854 aa8.67□□□□□ -1.02
VRK1-205ENST00000555402 TTBK2Q6IQ55 1244 aa8.67□□□□□ -1.02
VRK1-205ENST00000555402 TMEM151BQ8IW70 566 aa8.67□□□□□ -1.02
VRK1-205ENST00000555402 TMEM87BQ96K49 555 aa8.67□□□□□ -1.02
VRK1-205ENST00000555402 SETDB2Q96T68 719 aa8.67□□□□□ -1.02
VRK1-205ENST00000555402 DUSP9Q99956 384 aaKnown RBP8.67□□□□□ -1.02
VRK1-205ENST00000555402 MRS2Q9HD23 443 aa8.67□□□□□ -1.02
VRK1-205ENST00000555402 RTEL1Q9NZ71 1219 aa8.67□□□□□ -1.02
VRK1-205ENST00000555402 WWC3Q9ULE0 1092 aa8.67□□□□□ -1.02
VRK1-205ENST00000555402 CEP131Q9UPN4 1083 aa8.67□□□□□ -1.02
VRK1-205ENST00000555402 PGRP06401 933 aa8.66□□□□□ -1.02
VRK1-205ENST00000555402 TSNAXIP1Q2TAA8 658 aa8.66□□□□□ -1.02
VRK1-205ENST00000555402 SPPL2CQ8IUH8 684 aa8.66□□□□□ -1.02
VRK1-205ENST00000555402 CXorf38Q8TB03 319 aa8.66□□□□□ -1.02
VRK1-205ENST00000555402 PARP2Q9UGN5 583 aa8.66□□□□□ -1.02
VRK1-205ENST00000555402 VAMP1P23763 118 aa8.65□□□□□ -1.02
VRK1-205ENST00000555402 SSPNQ14714 243 aa8.65□□□□□ -1.02
VRK1-205ENST00000555402 SNX17Q15036 470 aa8.65□□□□□ -1.02
VRK1-205ENST00000555402 ALG1LQ6GMV1 187 aa8.65□□□□□ -1.02
VRK1-205ENST00000555402 SYTL4Q96C24 671 aaPredicted RBP8.65□□□□□ -1.02
VRK1-205ENST00000555402 FAM161BQ96MY7 647 aa8.65□□□□□ -1.02
VRK1-205ENST00000555402 XYLT2Q9H1B5 865 aa8.65□□□□□ -1.02
VRK1-205ENST00000555402 C12orf49Q9H741 205 aa8.65□□□□□ -1.02
VRK1-205ENST00000555402 FAM8A1Q9UBU6 413 aa8.65□□□□□ -1.02
VRK1-205ENST00000555402 PCDHA11Q9Y5I1 949 aa8.65□□□□□ -1.02
VRK1-205ENST00000555402 ADAMTS20P59510 1910 aa8.64□□□□□ -1.03
VRK1-205ENST00000555402 USP17L7P0C7H9 530 aa8.64□□□□□ -1.03
VRK1-205ENST00000555402 LTKP29376 864 aa8.64□□□□□ -1.03
VRK1-205ENST00000555402 ITGAEP38570 1179 aa8.64□□□□□ -1.03
VRK1-205ENST00000555402 PSMD2Q13200 908 aa8.64□□□□□ -1.03
VRK1-205ENST00000555402 MCATQ8IVS2 390 aaKnown RBP8.64□□□□□ -1.03
VRK1-205ENST00000555402 DTWD2Q8NBA8 298 aa8.64□□□□□ -1.03
VRK1-205ENST00000555402 GPR160Q9UJ42 338 aa8.64□□□□□ -1.03
VRK1-205ENST00000555402 PCDHB5Q9Y5E4 795 aa8.64□□□□□ -1.03
VRK1-205ENST00000555402 TCF3P15923 654 aa8.63□□□□□ -1.03
VRK1-205ENST00000555402 KRTAP10-2P60368 255 aa8.63□□□□□ -1.03
VRK1-205ENST00000555402 SEPT6Q14141 434 aa8.63□□□□□ -1.03
VRK1-205ENST00000555402 SKOR2Q2VWA4 1001 aaPredicted RBP8.63□□□□□ -1.03
VRK1-205ENST00000555402 PPP1R13LQ8WUF5 828 aa8.63□□□□□ -1.03
VRK1-205ENST00000555402 SHISA4Q96DD7 197 aa8.63□□□□□ -1.03
VRK1-205ENST00000555402 EBF1Q9UH73 591 aa8.63□□□□□ -1.03
VRK1-205ENST00000555402 KCNH3Q9ULD8 1083 aa8.63□□□□□ -1.03
VRK1-205ENST00000555402 SPG7Q9UQ90 795 aa8.63□□□□□ -1.03
VRK1-205ENST00000555402 RPS26P62854 115 aaKnown RBP8.62□□□□□ -1.03
VRK1-205ENST00000555402 CHRNEQ04844 493 aa8.62□□□□□ -1.03
VRK1-205ENST00000555402 KRTAP5-3Q6L8H2 238 aa8.62□□□□□ -1.03
VRK1-205ENST00000555402 PRRT2Q7Z6L0 340 aaPredicted RBP8.62□□□□□ -1.03
VRK1-205ENST00000555402 PANK1Q8TE04 598 aa8.62□□□□□ -1.03
VRK1-205ENST00000555402 TTF2Q9UNY4 1162 aaKnown RBP8.62□□□□□ -1.03
VRK1-205ENST00000555402 OTOL1A6NHN0 477 aaPredicted RBP8.61□□□□□ -1.03
VRK1-205ENST00000555402 SORBS3O60504 671 aa8.61□□□□□ -1.03
VRK1-205ENST00000555402 PSPNO60542 156 aa8.61□□□□□ -1.03
VRK1-205ENST00000555402 SASH1O94885 1247 aa8.61□□□□□ -1.03
VRK1-205ENST00000555402 GALK1P51570 392 aa8.61□□□□□ -1.03
VRK1-205ENST00000555402 GGNQ86UU5 652 aa8.61□□□□□ -1.03
VRK1-205ENST00000555402 BACH2Q9BYV9 841 aa8.61□□□□□ -1.03
VRK1-205ENST00000555402 IGSF5Q9NSI5 407 aa8.61□□□□□ -1.03
VRK1-205ENST00000555402 RNF19AQ9NV58 838 aa8.61□□□□□ -1.03
VRK1-205ENST00000555402 VTI1BQ9UEU0 232 aa8.61□□□□□ -1.03
VRK1-205ENST00000555402 RECKO95980 971 aa8.6□□□□□ -1.03
VRK1-205ENST00000555402 PI3P19957 117 aa8.6□□□□□ -1.03
VRK1-205ENST00000555402 LMNB1P20700 586 aa8.6□□□□□ -1.03
VRK1-205ENST00000555402 DAB2P98082 770 aa8.6□□□□□ -1.03
VRK1-205ENST00000555402 PDE4BQ07343 736 aa8.6□□□□□ -1.03
VRK1-205ENST00000555402 TMC4Q7Z404 712 aa8.6□□□□□ -1.03
VRK1-205ENST00000555402 ANKS4BQ8N8V4 417 aa8.6□□□□□ -1.03
VRK1-205ENST00000555402 ACSF2Q96CM8 615 aaPredicted RBP8.6□□□□□ -1.03
VRK1-205ENST00000555402 OR14I1A6ND48 311 aa8.59□□□□□ -1.03
VRK1-205ENST00000555402 DUSP4Q13115 394 aa8.59□□□□□ -1.03
VRK1-205ENST00000555402 MRPL58Q14197 206 aaKnown RBP8.59□□□□□ -1.03
VRK1-205ENST00000555402 DACT3Q96B18 629 aaPredicted RBP8.59□□□□□ -1.03
VRK1-205ENST00000555402 SIGLEC10Q96LC7 697 aa8.59□□□□□ -1.03
VRK1-205ENST00000555402 MBD1Q9UIS9 605 aaPredicted RBP8.59□□□□□ -1.03
VRK1-205ENST00000555402 ADAM30Q9UKF2 790 aa8.59□□□□□ -1.03
VRK1-205ENST00000555402 LRRN2O75325 713 aa8.58□□□□□ -1.04
VRK1-205ENST00000555402 GNA15P30679 374 aa8.58□□□□□ -1.04
VRK1-205ENST00000555402 NFKB2Q00653 900 aa8.58□□□□□ -1.04
VRK1-205ENST00000555402 TEKQ02763 1124 aa8.58□□□□□ -1.04
VRK1-205ENST00000555402 TMEM87AQ8NBN3 555 aa8.58□□□□□ -1.04
VRK1-205ENST00000555402 LINC01599Q8WXQ3 324 aa8.58□□□□□ -1.04
VRK1-205ENST00000555402 IRAK3Q9Y616 596 aa8.58□□□□□ -1.04
VRK1-205ENST00000555402 CELA3BP08861 270 aa8.57□□□□□ -1.04
VRK1-205ENST00000555402 SIRT2Q8IXJ6 389 aa8.57□□□□□ -1.04
VRK1-205ENST00000555402 AFF3P51826 1226 aaKnown RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms