RNA–Protein interactions for RNA: ENST00000555317.5

SRP54-206, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 644 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-206ENST00000555317 ZSWIM8A7E2V4 1837 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 TNPO2O14787 897 aaKnown RBP14.34□□□□□ -0.11
SRP54-206ENST00000555317 RANBP6O60518 1105 aaKnown RBP14.34□□□□□ -0.11
SRP54-206ENST00000555317 PRMT2P55345 433 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 HAND2P61296 217 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 TFAP4Q01664 338 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 RRP12Q5JTH9 1297 aaKnown RBP14.34□□□□□ -0.11
SRP54-206ENST00000555317 CATSPERGQ6ZRH7 1159 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 SPICE1Q8N0Z3 855 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 GPRC5AQ8NFJ5 357 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 COA7Q96BR5 231 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 TRIM47Q96LD4 638 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 PAGR1Q9BTK6 254 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 RNF41Q9H4P4 317 aaPredicted RBP14.34□□□□□ -0.11
SRP54-206ENST00000555317 VCPKMTQ9H867 229 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 CTNNA3Q9UI47 895 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 ANAPC4Q9UJX5 808 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 PTPN22Q9Y2R2 807 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 HTTP42858 3142 aa14.34□□□□□ -0.11
SRP54-206ENST00000555317 ZNF213O14771 459 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 WDR46O15213 610 aaKnown RBP14.33□□□□□ -0.12
SRP54-206ENST00000555317 TTLL1O95922 423 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 FAM47AQ5JRC9 791 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 SAMD1Q6SPF0 538 aaPredicted RBP14.33□□□□□ -0.12
SRP54-206ENST00000555317 MFSD6Q6ZSS7 791 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 NEDD1Q8NHV4 660 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 RAET1EQ8TD07 263 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 DSCC1Q9BVC3 393 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 NYAP2Q9P242 653 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 LAMA4Q16363 1823 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 MYPNQ86TC9 1320 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 PLIN4Q96Q06 1357 aa14.33□□□□□ -0.12
SRP54-206ENST00000555317 ORC4O43929 436 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 FLOT1O75955 427 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 PCP11498 1178 aaKnown RBP14.32□□□□□ -0.12
SRP54-206ENST00000555317 CHMLP26374 656 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 CCNA1P78396 465 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 IMMTQ16891 758 aaKnown RBP14.32□□□□□ -0.12
SRP54-206ENST00000555317 SLC9C1Q4G0N8 1177 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 NBPF11Q86T75 865 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 CEP95Q96GE4 821 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 MTMR4Q9NYA4 1195 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 HOXC10Q9NYD6 342 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 CLIP2Q9UDT6 1046 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 SRRDQ9UH36 339 aa14.32□□□□□ -0.12
SRP54-206ENST00000555317 ISY1Q9ULR0 285 aaKnown RBP14.32□□□□□ -0.12
SRP54-206ENST00000555317 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.32□□□□□ -0.12
SRP54-206ENST00000555317 ERVK-9P63128 1117 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 ERVK-24P63145 666 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 COG2Q14746 738 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 AKNAD1Q5T1N1 836 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 ERICH6BQ5W0A0 696 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 CASC1Q6TDU7 716 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 SIAH1Q8IUQ4 282 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.31□□□□□ -0.12
SRP54-206ENST00000555317 MORF4L1Q9UBU8 362 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 STX8Q9UNK0 236 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 RABGAP1Q9Y3P9 1069 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 PTCH2Q9Y6C5 1203 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 DOCK3Q8IZD9 2030 aa14.31□□□□□ -0.12
SRP54-206ENST00000555317 IGKV6D-41A0A0C4DH26 115 aa14.3□□□□□ -0.12
SRP54-206ENST00000555317 MAPK4P31152 587 aa14.3□□□□□ -0.12
SRP54-206ENST00000555317 CAP1Q01518 475 aa14.3□□□□□ -0.12
SRP54-206ENST00000555317 BMP2KLQ5H9B9 411 aa14.3□□□□□ -0.12
SRP54-206ENST00000555317 KIAA1211Q6ZU35 1233 aa14.3□□□□□ -0.12
SRP54-206ENST00000555317 STAG1Q8WVM7 1258 aa14.3□□□□□ -0.12
SRP54-206ENST00000555317 SYNPO2Q9UMS6 1093 aa14.3□□□□□ -0.12
SRP54-206ENST00000555317 CENPFP49454 3210 aa14.3□□□□□ -0.12
SRP54-206ENST00000555317 KIAA0100Q14667 2235 aaKnown RBP14.3□□□□□ -0.12
SRP54-206ENST00000555317 SPDYE16A6NNV3 312 aaPredicted RBP14.29□□□□□ -0.12
SRP54-206ENST00000555317 F5H6K3 240 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 CTGFP29279 349 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 NT5C2P49902 561 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 PRKCZQ05513 592 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 KLRC3Q07444 240 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 KIAA1755Q5JYT7 1200 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 FAM83BQ5T0W9 1011 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 WDR78Q5VTH9 848 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 LRRC47Q8N1G4 583 aaKnown RBP14.29□□□□□ -0.12
SRP54-206ENST00000555317 MB21D1Q8N884 522 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 ESR2Q92731 530 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 TXNRD2Q9NNW7 524 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 INCENPQ9NQS7 918 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 PPP4R2Q9NY27 417 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 RBPJLQ9UBG7 517 aa14.29□□□□□ -0.12
SRP54-206ENST00000555317 BIN2Q9UBW5 565 aaPredicted RBP14.29□□□□□ -0.12
SRP54-206ENST00000555317 CTDP1Q9Y5B0 961 aaPredicted RBP14.29□□□□□ -0.12
SRP54-206ENST00000555317 NDUFB10O96000 172 aa14.28□□□□□ -0.12
SRP54-206ENST00000555317 FGRP09769 529 aa14.28□□□□□ -0.12
SRP54-206ENST00000555317 PLS1Q14651 629 aa14.28□□□□□ -0.12
SRP54-206ENST00000555317 LBX2Q6XYB7 198 aa14.28□□□□□ -0.12
SRP54-206ENST00000555317 SKAP1Q86WV1 359 aa14.28□□□□□ -0.12
SRP54-206ENST00000555317 TBC1D10CQ8IV04 446 aa14.28□□□□□ -0.12
SRP54-206ENST00000555317 GMCL1P1Q8NEA9 526 aa14.28□□□□□ -0.12
SRP54-206ENST00000555317 MKL1Q969V6 931 aa14.28□□□□□ -0.12
SRP54-206ENST00000555317 CNNM2Q9H8M5 875 aa14.28□□□□□ -0.12
SRP54-206ENST00000555317 IVNS1ABPQ9Y6Y0 642 aa14.28□□□□□ -0.12
SRP54-206ENST00000555317 U3KPZ7 1027 aaPredicted RBP14.28□□□□□ -0.12
SRP54-206ENST00000555317 SGSM2O43147 1006 aa14.27□□□□□ -0.13
SRP54-206ENST00000555317 NMT2O60551 498 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms