RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 TAOK2Q9UL54 1235 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 CCDC171Q6TFL3 1326 aa13.8□□□□□ -0.2
CCDC88C-208ENST00000554165 MGAMO43451 1857 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 MAPK8IP2Q13387 824 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 ARHGEF6Q15052 776 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 SAMD1Q6SPF0 538 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 ZNF444Q8N0Y2 327 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 CHMP4CQ96CF2 233 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 CEP95Q96GE4 821 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 NUP88Q99567 741 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 TANGO6Q9C0B7 1094 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 NBPF3Q9H094 633 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 PORCNQ9H237 461 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 VCPKMTQ9H867 229 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 BTBD7Q9P203 1132 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 CLIP2Q9UDT6 1046 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 CENPFP49454 3210 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 MYPNQ86TC9 1320 aa13.79□□□□□ -0.2
CCDC88C-208ENST00000554165 GREB1LQ9C091 1923 aaPredicted RBP13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 SPDYE16A6NNV3 312 aaPredicted RBP13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 TNPO2O14787 897 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 RAD21O60216 631 aa13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 NMT2O60551 498 aa13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 FLT3LGP49771 235 aa13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 TFAP4Q01664 338 aa13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 TICAM2Q86XR7 235 aa13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 GPRC5AQ8NFJ5 357 aa13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 ARMC5Q96C12 935 aa13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 FBXO28Q9NVF7 368 aa13.78□□□□□ -0.2
CCDC88C-208ENST00000554165 POTEFA5A3E0 1075 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 GNRH1P01148 92 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 ELNP15502 786 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 ERVK-9P63128 1117 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 ERVK-24P63145 666 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 PDE4BQ07343 736 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 SLC9C1Q4G0N8 1177 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 LRRC47Q8N1G4 583 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 NEDD1Q8NHV4 660 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 RAET1EQ8TD07 263 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 ZNF333Q96JL9 665 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 MTMR4Q9NYA4 1195 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 NYAP2Q9P242 653 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 ANAPC4Q9UJX5 808 aa13.77□□□□□ -0.21
CCDC88C-208ENST00000554165 RLFQ13129 1914 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 NDUFB10O96000 172 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 SLC3A2P08195 630 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 TSPY3P0CV98 308 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 TSPY8P0CW00 308 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 CHMLP26374 656 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 HOXD10P28358 340 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 COG2Q14746 738 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 MTFR1Q15390 333 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 RRP12Q5JTH9 1297 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 FAM83BQ5T0W9 1011 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 TBC1D10CQ8IV04 446 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 ATG4CQ96DT6 458 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 IL17RBQ9NRM6 502 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 GJD2Q9UKL4 321 aa13.76□□□□□ -0.21
CCDC88C-208ENST00000554165 F5H6K3 240 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 ADCY3O60266 1144 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 RANBP6O60518 1105 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 FLOT1O75955 427 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 GRK4P32298 578 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 PRMT2P55345 433 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 KLRC3Q07444 240 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 CENPQQ7L2Z9 268 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 RASGRP2Q7LDG7 609 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 LPAR1Q92633 364 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 COA7Q96BR5 231 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 SH2D4AQ9H788 454 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 ZNF287Q9HBT7 754 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 TOMM22Q9NS69 142 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 RABGAP1Q9Y3P9 1069 aa13.75□□□□□ -0.21
CCDC88C-208ENST00000554165 PLIN4Q96Q06 1357 aa13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 TSPY2A6NKD2 308 aa13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 HIP1O00291 1037 aa13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 WDR46O15213 610 aaKnown RBP13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 ORC4O43929 436 aa13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 FGRP09769 529 aa13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 DSG3P32926 999 aa13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 RGS19P49795 217 aa13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 LBX2Q6XYB7 198 aa13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 GOPCQ9HD26 462 aa13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 BIN2Q9UBW5 565 aaPredicted RBP13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 PLXNB2O15031 1838 aa13.74□□□□□ -0.21
CCDC88C-208ENST00000554165 ZMYM6O95789 1325 aa13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 NEDD4P46934 1319 aa13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 TTLL1O95922 423 aa13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 EN2P19622 333 aaPredicted RBP13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 CYP2B6P20813 491 aa13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 MFAP1P55081 439 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 PTH1RQ03431 593 aa13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 TRIM32Q13049 653 aa13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 GPR142Q7Z601 462 aa13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 GTF3C2Q8WUA4 911 aaPredicted RBP13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 MKL1Q969V6 931 aa13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 MOV10L1Q9BXT6 1211 aaKnown RBP13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 HOXC10Q9NYD6 342 aa13.73□□□□□ -0.21
CCDC88C-208ENST00000554165 MYH4Q9Y623 1939 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms