RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 SEPT4O43236 478 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 STRNO43815 780 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 PQBP1O60828 265 aaKnown RBP6.48□□□□□ -1.37
CKAP4-203ENST00000553039 FGBP02675 491 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 HOXC6P09630 235 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 ITGB8P26012 769 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 HERVK_113P62684 666 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 ERVK-9P63128 1117 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 ERVK-24P63145 666 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 CALD1Q05682 793 aaKnown RBP6.48□□□□□ -1.37
CKAP4-203ENST00000553039 NFIAQ12857 509 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 PKN1Q16512 942 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 TMEM240Q5SV17 173 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 WDR78Q5VTH9 848 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 PSRC1Q6PGN9 363 aaPredicted RBP6.48□□□□□ -1.37
CKAP4-203ENST00000553039 RNF180Q86T96 592 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 SLF2Q8IX21 1173 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 NUP133Q8WUM0 1156 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 SPIRE2Q8WWL2 714 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 IDI2Q9BXS1 227 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 FAM198AQ9UFP1 575 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 IQSEC3Q9UPP2 1182 aaPredicted RBP6.48□□□□□ -1.37
CKAP4-203ENST00000553039 RABGAP1Q9Y3P9 1069 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 DOCK3Q8IZD9 2030 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 MROH5Q6ZUA9 1318 aa6.48□□□□□ -1.37
CKAP4-203ENST00000553039 DDX60LQ5H9U9 1706 aaKnown RBP6.47□□□□□ -1.37
CKAP4-203ENST00000553039 CACNA1GO43497 2377 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 E9PSI1 815 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 PTPREP23469 700 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 CYP2C19P33261 490 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 RBM25P49756 843 aaKnown RBP6.47□□□□□ -1.37
CKAP4-203ENST00000553039 RGS3P49796 1198 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 PTPN5P54829 565 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 BACE1P56817 501 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 GNAI1P63096 354 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 LRRC41Q15345 812 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 RASIP1Q5U651 963 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 LMBR1LQ6UX01 489 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 ZNF365Q70YC5 407 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 ANKRD33Q7Z3H0 272 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 ZFPM1Q8IX07 1006 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 LINS1Q8NG48 757 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 WDR18Q9BV38 432 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 UPF3BQ9BZI7 483 aaKnown RBP6.47□□□□□ -1.37
CKAP4-203ENST00000553039 NKX2-4Q9H2Z4 354 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 PHF24Q9UPV7 400 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 ZNF521Q96K83 1311 aa6.47□□□□□ -1.37
CKAP4-203ENST00000553039 USP17L10C9JJH3 530 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 LDHBP07195 334 aaKnown RBP6.46□□□□□ -1.38
CKAP4-203ENST00000553039 IFIT1P09914 478 aaKnown RBP6.46□□□□□ -1.38
CKAP4-203ENST00000553039 RARBP10826 455 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 CAP2P40123 477 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 ABL2P42684 1182 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 CASP7P55210 303 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 FOXO4P98177 505 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 FAAP100Q0VG06 881 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 PUS10Q3MIT2 529 aaKnown RBP6.46□□□□□ -1.38
CKAP4-203ENST00000553039 OLFML2BQ68BL8 750 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 ASTLQ6HA08 431 aaPredicted RBP6.46□□□□□ -1.38
CKAP4-203ENST00000553039 C16orf59Q7L2K0 433 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 RPUSD2Q8IZ73 545 aaKnown RBP6.46□□□□□ -1.38
CKAP4-203ENST00000553039 KHSRPQ92945 711 aaKnown RBP eCLIP6.46□□□□□ -1.38
CKAP4-203ENST00000553039 ZNF594Q96JF6 807 aaPredicted RBP6.46□□□□□ -1.38
CKAP4-203ENST00000553039 TSEN34Q9BSV6 310 aaKnown RBP6.46□□□□□ -1.38
CKAP4-203ENST00000553039 PAGR1Q9BTK6 254 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 PORCNQ9H237 461 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 TXNRD2Q9NNW7 524 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 MBIPQ9NS73 344 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 GINM1Q9NU53 330 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 GNL3LQ9NVN8 582 aaKnown RBP6.46□□□□□ -1.38
CKAP4-203ENST00000553039 DAGLAQ9Y4D2 1042 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 PCDHA11Q9Y5I1 949 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 MTCH2Q9Y6C9 303 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 MROH7Q68CQ1 1323 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 CLSPNQ9HAW4 1339 aa6.46□□□□□ -1.38
CKAP4-203ENST00000553039 MGAMO43451 1857 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 ZDBF2Q9HCK1 2354 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 KIF28PB7ZC32 967 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 TLR3O15455 904 aaKnown RBP6.45□□□□□ -1.38
CKAP4-203ENST00000553039 DCXO43602 365 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 LILRB3O75022 631 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 IGSF3O75054 1194 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 CYBAP13498 195 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 PADI6Q6TGC4 694 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 FAM178BQ8IXR5 827 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 ZGPATQ8N5A5 531 aaKnown RBP6.45□□□□□ -1.38
CKAP4-203ENST00000553039 NLRP7Q8WX94 980 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 VTI1AQ96AJ9 217 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 IL23AQ9NPF7 189 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 FLRT1Q9NZU1 646 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 LMCD1Q9NZU5 365 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 NRBP1Q9UHY1 535 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 SLC4A7Q9Y6M7 1214 aa6.45□□□□□ -1.38
CKAP4-203ENST00000553039 TCF20Q9UGU0 1960 aaKnown RBP6.45□□□□□ -1.38
CKAP4-203ENST00000553039 OTOFQ9HC10 1997 aa6.44□□□□□ -1.38
CKAP4-203ENST00000553039 ECM29Q5VYK3 1845 aa6.44□□□□□ -1.38
CKAP4-203ENST00000553039 POTEB3A0JP26 581 aa6.44□□□□□ -1.38
CKAP4-203ENST00000553039 DDTLA6NHG4 134 aaPredicted RBP6.44□□□□□ -1.38
CKAP4-203ENST00000553039 USP17L15C9J2P7 530 aa6.44□□□□□ -1.38
CKAP4-203ENST00000553039 USP17L13C9JLJ4 530 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms