RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	SETBP1	Q9Y6X0	1596 aa		3.9	□□□□□ -1.78
PTCH1-223	ENST00000551623	EOMES	O95936	686 aa		3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	ERVFC1	P60507	584 aa		3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	ERVK-24	P63145	666 aa		3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	PTPN12	Q05209	780 aa	Known RBP	3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	MYLIP	Q8WY64	445 aa		3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	MCOLN1	Q9GZU1	580 aa		3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	PRDM5	Q9NQX1	630 aa	Predicted RBP	3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	SLAMF8	Q9P0V8	285 aa		3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	MAPK8IP1	Q9UQF2	711 aa		3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	AHDC1	Q5TGY3	1603 aa	Predicted RBP	3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	SHPRH	Q149N8	1683 aa		3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	ADGB	Q8N7X0	1667 aa		3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	PRDM15	P57071	1507 aa	Predicted RBP	3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	SYCP2	Q9BX26	1530 aa		3.9	□□□□□ -1.79
PTCH1-223	ENST00000551623	TMEM94	Q12767	1356 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	RGS12	O14924	1447 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	NCOA3	Q9Y6Q9	1424 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	OTOL1	A6NHN0	477 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	FAM155A	B1AL88	458 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623		H3BS24	57 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	SUV39H1	O43463	412 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	SEMA7A	O75326	666 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	SASH1	O94885	1247 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	IGHA2	P01877	340 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	ATP2B4	P23634	1241 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	ZNF157	P51786	506 aa	Predicted RBP	3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	AAMP	Q13685	434 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	ZNF385B	Q569K4	471 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	ZC3H12A	Q5D1E8	599 aa	Known RBP	3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	CDKAL1	Q5VV42	579 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	KIAA0319	Q5VV43	1072 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	TMEM151B	Q8IW70	566 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	NCOA2	Q15596	1464 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	SPAG9	O60271	1321 aa	Known RBP	3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	DIP2A	Q14689	1571 aa		3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	DHX29	Q7Z478	1369 aa	Known RBP	3.89	□□□□□ -1.79
PTCH1-223	ENST00000551623	NHSL1	Q5SYE7	1610 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	MBD5	Q9P267	1494 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	MYOCOS	A0A1B0GUC4	107 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	PRR33	A8MZF0	331 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	RFXAP	O00287	272 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	HPX	P02790	462 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	FAAP100	Q0VG06	881 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	SPATS1	Q496A3	300 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	GJD3	Q8N144	294 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	KCNB2	Q92953	911 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	EHD4	Q9H223	541 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	TMEM59L	Q9UK28	342 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	KCTD3	Q9Y597	815 aa		3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	GPATCH8	Q9UKJ3	1502 aa	Known RBP	3.88	□□□□□ -1.79
PTCH1-223	ENST00000551623	TET3	O43151	1660 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	EEA1	Q15075	1411 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	CDC42BPA	Q5VT25	1732 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	ERVK-7	P63135	1459 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	CCDC18	Q5T9S5	1454 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	DNAJC25-GNG10	A0A024R161	153 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	PEX10	O60683	326 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	RALGPS1	Q5JS13	557 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	C22orf34	Q6ZV56	151 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	PDZD3	Q86UT5	571 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	IRF2BP1	Q8IU81	584 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	MFSD4A	Q8N468	514 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	DNAJC25	Q9H1X3	360 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	ABCB6	Q9NP58	842 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	KDM5A	P29375	1690 aa	Known RBP	3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	PHLPP1	O60346	1717 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	UBR1	Q8IWV7	1749 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	ARHGAP31	Q2M1Z3	1444 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	SETD5	Q9C0A6	1442 aa		3.87	□□□□□ -1.79
PTCH1-223	ENST00000551623	ARHGAP35	Q9NRY4	1499 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	FZD6	O60353	706 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	ATG7	O95352	703 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	KCNA6	P17658	529 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	HK2	P52789	917 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	EFEMP1	Q12805	493 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	PUM1	Q14671	1186 aa	Known RBP eCLIP	3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	GGT6	Q6P531	493 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	UBE3D	Q7Z6J8	389 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	THAP5	Q7Z6K1	395 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	ZNF605	Q86T29	641 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	GTF3C2	Q8WUA4	911 aa	Predicted RBP	3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	RNF32	Q9H0A6	362 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	GCM1	Q9NP62	436 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	ST14	Q9Y5Y6	855 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	BCL9L	Q86UU0	1499 aa		3.86	□□□□□ -1.79
PTCH1-223	ENST00000551623	LRRIQ1	Q96JM4	1722 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	TEX51	A0A1B0GUA7	166 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	INSRR	P14616	1297 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	NPR3	P17342	541 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	LTK	P29376	864 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	NTF4	P34130	210 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	RBM6	P78332	1123 aa	Known RBP	3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	MTMR3	Q13615	1198 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	PPM1J	Q5JR12	505 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	SFRP5	Q5T4F7	317 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	USPL1	Q5W0Q7	1092 aa		3.85	□□□□□ -1.79
PTCH1-223	ENST00000551623	FEZF2	Q8TBJ5	459 aa		3.85	□□□□□ -1.79

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