RNA–Protein interactions for RNA: ENST00000551355.5

NEK3-203, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 727 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-203ENST00000551355 ASPRV1Q53RT3 343 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 GPATCH4Q5T3I0 446 aaKnown RBP12.11□□□□□ -0.47
NEK3-203ENST00000551355 ARMC9Q7Z3E5 817 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 TRIM22Q8IYM9 498 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 SMARCC2Q8TAQ2 1214 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 WASF1Q92558 559 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 GOPCQ9HD26 462 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 CSADQ9Y600 493 aa12.11□□□□□ -0.47
NEK3-203ENST00000551355 USP2O75604 605 aaPredicted RBP12.1□□□□□ -0.47
NEK3-203ENST00000551355 SNHG28P0DPA3 235 aa12.1□□□□□ -0.47
NEK3-203ENST00000551355 ATP2B2Q01814 1243 aa12.1□□□□□ -0.47
NEK3-203ENST00000551355 RRP1BQ14684 758 aaKnown RBP12.1□□□□□ -0.47
NEK3-203ENST00000551355 PRAMEF18Q5VWM3 479 aa12.1□□□□□ -0.47
NEK3-203ENST00000551355 FAM184AQ8NB25 1140 aa12.1□□□□□ -0.47
NEK3-203ENST00000551355 NSUN7Q8NE18 718 aaKnown RBP12.1□□□□□ -0.47
NEK3-203ENST00000551355 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.1□□□□□ -0.47
NEK3-203ENST00000551355 DCAF4Q8WV16 495 aa12.1□□□□□ -0.47
NEK3-203ENST00000551355 GMCL1Q96IK5 515 aa12.1□□□□□ -0.47
NEK3-203ENST00000551355 MYL10Q9BUA6 226 aa12.1□□□□□ -0.47
NEK3-203ENST00000551355 WDR18Q9BV38 432 aa12.1□□□□□ -0.47
NEK3-203ENST00000551355 GLIS2Q9BZE0 524 aaPredicted RBP12.1□□□□□ -0.47
NEK3-203ENST00000551355 NCOA5Q9HCD5 579 aaKnown RBP12.1□□□□□ -0.47
NEK3-203ENST00000551355 TMX2Q9Y320 296 aa12.1□□□□□ -0.47
NEK3-203ENST00000551355 STK36Q9NRP7 1315 aa12.1□□□□□ -0.47
NEK3-203ENST00000551355 SIPA1L1O43166 1804 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 PTPDC1A2A3K4 754 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 PALM3A6NDB9 673 aaPredicted RBP12.09□□□□□ -0.47
NEK3-203ENST00000551355 SLURP2P0DP57 97 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 PDHBP11177 359 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 ADD1P35611 737 aaKnown RBP12.09□□□□□ -0.47
NEK3-203ENST00000551355 USP14P54578 494 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 NUCB2P80303 420 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 AKAP17AQ02040 695 aaKnown RBP12.09□□□□□ -0.47
NEK3-203ENST00000551355 SSRP1Q08945 709 aaKnown RBP12.09□□□□□ -0.47
NEK3-203ENST00000551355 ST3GAL1Q11201 340 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 CHADLQ6NUI6 762 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 TMTC3Q6ZXV5 915 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 SIAH1Q8IUQ4 282 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 ANKRD13AQ8IZ07 590 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 SPRYD3Q8NCJ5 442 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 LPAR1Q92633 364 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 RNF26Q9BY78 433 aaPredicted RBP12.09□□□□□ -0.47
NEK3-203ENST00000551355 GPBP1L1Q9HC44 474 aaPredicted RBP12.09□□□□□ -0.47
NEK3-203ENST00000551355 NMRK2Q9NPI5 230 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 FAM217BQ9NTX9 383 aaPredicted RBP12.09□□□□□ -0.47
NEK3-203ENST00000551355 CHMP5Q9NZZ3 219 aa12.09□□□□□ -0.47
NEK3-203ENST00000551355 C19orf81C9J6K1 198 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 F5H6K3 240 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 FMNL1O95466 1100 aaPredicted RBP12.08□□□□□ -0.48
NEK3-203ENST00000551355 PTPRAP18433 802 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 RXRAP19793 462 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 GJB2P29033 226 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 CDC27P30260 824 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 INPP5BP32019 993 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 DDIT3P35638 169 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 SLC1A4P43007 532 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 JAG1P78504 1218 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 KLRC3Q07444 240 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 TTLL12Q14166 644 aaPredicted RBP12.08□□□□□ -0.48
NEK3-203ENST00000551355 NTRK3Q16288 839 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 MAP1SQ66K74 1059 aaPredicted RBP12.08□□□□□ -0.48
NEK3-203ENST00000551355 SLFN13Q68D06 897 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 CCDC144CPQ8IYA2 1237 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 FAM177A1Q8N128 213 aaPredicted RBP12.08□□□□□ -0.48
NEK3-203ENST00000551355 LRRC47Q8N1G4 583 aaKnown RBP12.08□□□□□ -0.48
NEK3-203ENST00000551355 RBM46Q8TBY0 533 aaKnown RBP12.08□□□□□ -0.48
NEK3-203ENST00000551355 KIAA1683Q9H0B3 1180 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 MAD2L2Q9UI95 211 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 SSC5DA1L4H1 1573 aa12.08□□□□□ -0.48
NEK3-203ENST00000551355 USP17L10C9JJH3 530 aa12.07□□□□□ -0.48
NEK3-203ENST00000551355 KLRF2D3W0D1 207 aa12.07□□□□□ -0.48
NEK3-203ENST00000551355 PRPF3O43395 683 aaKnown RBP12.07□□□□□ -0.48
NEK3-203ENST00000551355 DEXIO95424 95 aa12.07□□□□□ -0.48
NEK3-203ENST00000551355 CTDNEP1O95476 244 aa12.07□□□□□ -0.48
NEK3-203ENST00000551355 XBP1P17861 261 aa12.07□□□□□ -0.48
NEK3-203ENST00000551355 ZNF543Q08ER8 600 aa12.07□□□□□ -0.48
NEK3-203ENST00000551355 ZNF280CQ8ND82 737 aa12.07□□□□□ -0.48
NEK3-203ENST00000551355 ZNF526Q8TF50 670 aaPredicted RBP12.07□□□□□ -0.48
NEK3-203ENST00000551355 FEZ1Q99689 392 aa12.07□□□□□ -0.48
NEK3-203ENST00000551355 SPZ1Q9BXG8 430 aa12.07□□□□□ -0.48
NEK3-203ENST00000551355 VCPKMTQ9H867 229 aa12.07□□□□□ -0.48
NEK3-203ENST00000551355 ORC3Q9UBD5 711 aaPredicted RBP12.07□□□□□ -0.48
NEK3-203ENST00000551355 GREB1LQ9C091 1923 aaPredicted RBP12.06□□□□□ -0.48
NEK3-203ENST00000551355 A0A1W2PRG0 241 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 PLA2G6O60733 806 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 NDUFB10O96000 172 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 POTEIP0CG38 1075 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 POTEJP0CG39 1038 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 BMP3P12645 472 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 PPATQ06203 517 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 VGLL4Q14135 290 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 CCDC96Q2M329 555 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 SHROOM1Q2M3G4 852 aaPredicted RBP12.06□□□□□ -0.48
NEK3-203ENST00000551355 LARP1BQ659C4 914 aaKnown RBP12.06□□□□□ -0.48
NEK3-203ENST00000551355 USP17L2Q6R6M4 530 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.06□□□□□ -0.48
NEK3-203ENST00000551355 ERO1BQ86YB8 467 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 RAB11FIP4Q86YS3 637 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 CLEC10AQ8IUN9 316 aa12.06□□□□□ -0.48
NEK3-203ENST00000551355 C2orf69Q8N8R5 385 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms