RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 BRCA2P51587 3418 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 MKI67P46013 3256 aaKnown RBP13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 WDR46O15213 610 aaKnown RBP13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 EVI5O60447 810 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 CNMDO75829 334 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 HOXC6P09630 235 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 PRKAR2AP13861 404 aaKnown RBP13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 AKR1B1P15121 316 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 PTPREP23469 700 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 RRP1P56182 461 aaKnown RBP13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 SLFNL1Q499Z3 407 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 WDR78Q5VTH9 848 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 SLC44A5Q8NCS7 719 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 SHCBP1Q8NEM2 672 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 NACAP1Q9BZK3 213 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 NBPF3Q9H094 633 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 VCPKMTQ9H867 229 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 MKNK2Q9HBH9 465 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 GOPCQ9HD26 462 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 PCDHB15Q9Y5E8 787 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 MYH1P12882 1939 aa13.03□□□□□ -0.32
VTI1BP3-201ENST00000550220 ATAD5Q96QE3 1844 aa13.02□□□□□ -0.32
VTI1BP3-201ENST00000550220 MYO5AQ9Y4I1 1855 aaKnown RBP13.02□□□□□ -0.32
VTI1BP3-201ENST00000550220 GSG1L2A8MUP6 293 aa13.02□□□□□ -0.33
VTI1BP3-201ENST00000550220 FLOT1O75955 427 aa13.02□□□□□ -0.33
VTI1BP3-201ENST00000550220 DSG3P32926 999 aa13.02□□□□□ -0.33
VTI1BP3-201ENST00000550220 ATP2B2Q01814 1243 aa13.02□□□□□ -0.33
VTI1BP3-201ENST00000550220 POTEEQ6S8J3 1075 aa13.02□□□□□ -0.33
VTI1BP3-201ENST00000550220 PAWRQ96IZ0 340 aaKnown RBP13.02□□□□□ -0.33
VTI1BP3-201ENST00000550220 MROH8Q9H579 483 aa13.02□□□□□ -0.33
VTI1BP3-201ENST00000550220 BTBD7Q9P203 1132 aa13.02□□□□□ -0.33
VTI1BP3-201ENST00000550220 OGDHLQ9ULD0 1010 aa13.02□□□□□ -0.33
VTI1BP3-201ENST00000550220 MGAMO43451 1857 aa13.02□□□□□ -0.33
VTI1BP3-201ENST00000550220 PATL2C9JE40 543 aaKnown RBP13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 MSCO60682 206 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 PEX10O60683 326 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 APPP05067 770 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 SLC3A2P08195 630 aaKnown RBP13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 EEF2P13639 858 aaKnown RBP13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 EVX2Q03828 476 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 CACNB2Q08289 660 aaPredicted RBP13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 GRB14Q14449 540 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 DPP9Q86TI2 863 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 TICAM2Q86XR7 235 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 SIAH1Q8IUQ4 282 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 ZNF444Q8N0Y2 327 aaPredicted RBP13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 ABRAQ8N0Z2 381 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 OSBP2Q969R2 916 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 SPATC1LQ9H0A9 340 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 COLQQ9Y215 455 aaPredicted RBP13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 CDK5RAP2Q96SN8 1893 aa13.01□□□□□ -0.33
VTI1BP3-201ENST00000550220 CYP2D7A0A087X1C5 515 aa13□□□□□ -0.33
VTI1BP3-201ENST00000550220 GPAA1O43292 621 aa13□□□□□ -0.33
VTI1BP3-201ENST00000550220 SLC25A27O95847 323 aa13□□□□□ -0.33
VTI1BP3-201ENST00000550220 COPB2P35606 906 aa13□□□□□ -0.33
VTI1BP3-201ENST00000550220 TDO2P48775 406 aa13□□□□□ -0.33
VTI1BP3-201ENST00000550220 TRIM32Q13049 653 aa13□□□□□ -0.33
VTI1BP3-201ENST00000550220 MOV10L1Q9BXT6 1211 aaKnown RBP13□□□□□ -0.33
VTI1BP3-201ENST00000550220 C11orf49Q9H6J7 331 aa13□□□□□ -0.33
VTI1BP3-201ENST00000550220 SYNPO2Q9UMS6 1093 aa13□□□□□ -0.33
VTI1BP3-201ENST00000550220 DOCK3Q8IZD9 2030 aa13□□□□□ -0.33
VTI1BP3-201ENST00000550220 MINDY4BA8MYZ0 360 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 CHGBP05060 677 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 ERCC3P19447 782 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 MX1P20591 662 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 HDAC1Q13547 482 aaPredicted RBP12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 PLS1Q14651 629 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 PPP4R3BQ5MIZ7 849 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 OLFML2BQ68BL8 750 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 SPICE1Q8N0Z3 855 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 PI4K2BQ8TCG2 481 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 FSD1Q9BTV5 496 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 NYAP2Q9P242 653 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 ADAMTS5Q9UNA0 930 aa12.99□□□□□ -0.33
VTI1BP3-201ENST00000550220 CEP290O15078 2479 aa12.98□□□□□ -0.33
VTI1BP3-201ENST00000550220 A0A1W2PPC1 479 aa12.98□□□□□ -0.33
VTI1BP3-201ENST00000550220 PDE4BQ07343 736 aa12.98□□□□□ -0.33
VTI1BP3-201ENST00000550220 CCL14Q16627 93 aa12.98□□□□□ -0.33
VTI1BP3-201ENST00000550220 ANKRD45Q5TZF3 282 aa12.98□□□□□ -0.33
VTI1BP3-201ENST00000550220 TSHZ3Q63HK5 1081 aa12.98□□□□□ -0.33
VTI1BP3-201ENST00000550220 CHRDL2Q6WN34 429 aa12.98□□□□□ -0.33
VTI1BP3-201ENST00000550220 NCAPG2Q86XI2 1143 aa12.98□□□□□ -0.33
VTI1BP3-201ENST00000550220 IFNL3Q8IZI9 196 aa12.98□□□□□ -0.33
VTI1BP3-201ENST00000550220 ROBO3Q96MS0 1386 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 FCER1AP12319 257 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 RASA1P20936 1047 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 ADORA2AP29274 412 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 KIAA1755Q5JYT7 1200 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 ZMYM1Q5SVZ6 1142 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 LHX8Q68G74 356 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 MKL1Q969V6 931 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 EVI5LQ96CN4 794 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 ATG4CQ96DT6 458 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 PPP1R9AQ9ULJ8 1098 aa12.97□□□□□ -0.33
VTI1BP3-201ENST00000550220 DDX60LQ5H9U9 1706 aaKnown RBP12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 F5H6K3 240 aa12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 RAD21O60216 631 aa12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 CCND3P30281 292 aaPredicted RBP12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 STAT3P40763 770 aa12.96□□□□□ -0.33
VTI1BP3-201ENST00000550220 KLRC3Q07444 240 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms