RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ANKRD2Q9GZV1 360 aa8.33□□□□□ -1.08
LIMA1-204ENST00000549064 PDHXO00330 501 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 ADCY3O60266 1144 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 IGKV5-2P06315 115 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 ITGA6P23229 1130 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 CACNB3P54284 484 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 RAB15P59190 212 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 LMOD3Q0VAK6 560 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 PPIL2Q13356 520 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 GLYCTKQ8IVS8 523 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 WRNIP1Q96S55 665 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 PNNQ9H307 717 aaKnown RBP8.32□□□□□ -1.08
LIMA1-204ENST00000549064 EGFL7Q9UHF1 273 aa8.32□□□□□ -1.08
LIMA1-204ENST00000549064 ESPNB1AK53 854 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 ELL2O00472 640 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-204ENST00000549064 ICMTO60725 284 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 IL1R1P14778 569 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 FLT3LGP49771 235 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 FCGRTP55899 365 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 FKBP1AP62942 108 aaKnown RBP8.31□□□□□ -1.08
LIMA1-204ENST00000549064 CWF19L2Q2TBE0 894 aaKnown RBP8.31□□□□□ -1.08
LIMA1-204ENST00000549064 CAPN12Q6ZSI9 719 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 NECAB2Q7Z6G3 386 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 ANKRD23Q86SG2 305 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 CCDC146Q8IYE0 955 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 DZIP1LQ8IYY4 767 aaKnown RBP8.31□□□□□ -1.08
LIMA1-204ENST00000549064 TSEN2Q8NCE0 465 aaKnown RBP8.31□□□□□ -1.08
LIMA1-204ENST00000549064 GTF3C2Q8WUA4 911 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-204ENST00000549064 KCTD12Q96CX2 325 aaKnown RBP8.31□□□□□ -1.08
LIMA1-204ENST00000549064 MPHOSPH8Q99549 860 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 UBE2OQ9C0C9 1292 aaKnown RBP8.31□□□□□ -1.08
LIMA1-204ENST00000549064 IGSF5Q9NSI5 407 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 TTF2Q9UNY4 1162 aaKnown RBP8.31□□□□□ -1.08
LIMA1-204ENST00000549064 MAP3K2Q9Y2U5 619 aa8.31□□□□□ -1.08
LIMA1-204ENST00000549064 CYP2C8P10632 490 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 BCRP11274 1271 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 INPP5BP32019 993 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 USP4Q13107 963 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 MTMR3Q13615 1198 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 MOGSQ13724 837 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 GRIK5Q16478 980 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 NBPF20Q3BBV1 942 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 MFSD14BQ5SR56 506 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 UBE3BQ7Z3V4 1068 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 ZNF804AQ7Z570 1209 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 PURBQ96QR8 312 aaKnown RBP8.3□□□□□ -1.08
LIMA1-204ENST00000549064 PAK6Q9NQU5 681 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-204ENST00000549064 FCF1Q9Y324 198 aaKnown RBP8.3□□□□□ -1.08
LIMA1-204ENST00000549064 DNMT3AQ9Y6K1 912 aaPredicted RBP8.3□□□□□ -1.08
LIMA1-204ENST00000549064 AK9Q5TCS8 1911 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 DNAH12Q6ZR08 3092 aa8.3□□□□□ -1.08
LIMA1-204ENST00000549064 S1PR4O95977 384 aa8.29□□□□□ -1.08
LIMA1-204ENST00000549064 MAPK1P28482 360 aa8.29□□□□□ -1.08
LIMA1-204ENST00000549064 CRKP46108 304 aa8.29□□□□□ -1.08
LIMA1-204ENST00000549064 TNNI2P48788 182 aa8.29□□□□□ -1.08
LIMA1-204ENST00000549064 FKBP5Q13451 457 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-204ENST00000549064 C15orf52Q6ZUT6 534 aaKnown RBP8.29□□□□□ -1.08
LIMA1-204ENST00000549064 MIGA2Q7L4E1 593 aa8.29□□□□□ -1.08
LIMA1-204ENST00000549064 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.29□□□□□ -1.08
LIMA1-204ENST00000549064 C1QTNF2Q9BXJ5 285 aa8.29□□□□□ -1.08
LIMA1-204ENST00000549064 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.29□□□□□ -1.08
LIMA1-204ENST00000549064 MBIPQ9NS73 344 aa8.29□□□□□ -1.08
LIMA1-204ENST00000549064 PTPRFP10586 1907 aa8.29□□□□□ -1.08
LIMA1-204ENST00000549064 COL2A1P02458 1487 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-204ENST00000549064 PI4KAP2A4QPH2 592 aa8.28□□□□□ -1.08
LIMA1-204ENST00000549064 NEURL1BA8MQ27 555 aa8.28□□□□□ -1.08
LIMA1-204ENST00000549064 H7C1W4 665 aa8.28□□□□□ -1.08
LIMA1-204ENST00000549064 PPATQ06203 517 aa8.28□□□□□ -1.08
LIMA1-204ENST00000549064 GPAT2Q6NUI2 795 aa8.28□□□□□ -1.08
LIMA1-204ENST00000549064 PI4KAP1Q8N8J0 262 aa8.28□□□□□ -1.08
LIMA1-204ENST00000549064 PARK7Q99497 189 aaKnown RBP8.28□□□□□ -1.08
LIMA1-204ENST00000549064 KCNH4Q9UQ05 1017 aa8.28□□□□□ -1.08
LIMA1-204ENST00000549064 TTC28Q96AY4 2481 aa8.28□□□□□ -1.08
LIMA1-204ENST00000549064 FAM205AQ6ZU69 1335 aa8.28□□□□□ -1.08
LIMA1-204ENST00000549064 TNPO2O14787 897 aaKnown RBP8.27□□□□□ -1.09
LIMA1-204ENST00000549064 PLIN1O60240 522 aa8.27□□□□□ -1.09
LIMA1-204ENST00000549064 DDX58O95786 925 aaKnown RBP8.27□□□□□ -1.09
LIMA1-204ENST00000549064 WEE1P30291 646 aa8.27□□□□□ -1.09
LIMA1-204ENST00000549064 SH3BP2P78314 561 aa8.27□□□□□ -1.09
LIMA1-204ENST00000549064 TAGLNQ01995 201 aaKnown RBP8.27□□□□□ -1.09
LIMA1-204ENST00000549064 TRIM32Q13049 653 aa8.27□□□□□ -1.09
LIMA1-204ENST00000549064 TJAP1Q5JTD0 557 aa8.27□□□□□ -1.09
LIMA1-204ENST00000549064 FAM109BQ6ICB4 259 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-204ENST00000549064 KSR2Q6VAB6 950 aa8.27□□□□□ -1.09
LIMA1-204ENST00000549064 MAFAQ8NHW3 353 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-204ENST00000549064 C11orf49Q9H6J7 331 aa8.27□□□□□ -1.09
LIMA1-204ENST00000549064 IL21Q9HBE4 155 aa8.27□□□□□ -1.09
LIMA1-204ENST00000549064 PFASO15067 1338 aa8.27□□□□□ -1.09
LIMA1-204ENST00000549064 CDH23Q9H251 3354 aa8.27□□□□□ -1.09
LIMA1-204ENST00000549064 ANKRD18BA2A2Z9 1011 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 CSF1RP07333 972 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 GYG1P46976 350 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 SCTRP47872 440 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 CASP7P55210 303 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 ECM1Q16610 540 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 LCE2DQ5TA82 110 aaPredicted RBP8.26□□□□□ -1.09
LIMA1-204ENST00000549064 ZNF697Q5TEC3 545 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 ANKLE1Q8NAG6 615 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 C8orf58Q8NAV2 365 aa8.26□□□□□ -1.09
LIMA1-204ENST00000549064 TDRD7Q8NHU6 1098 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms