RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 WDHD1O75717 1129 aaPredicted RBP17.61■□□□□ 0.41
CUX1-211ENST00000546411 CABP7Q86V35 215 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 REXO1Q8N1G1 1221 aaKnown RBP17.61■□□□□ 0.41
CUX1-211ENST00000546411 RBM17Q96I25 401 aaKnown RBP17.61■□□□□ 0.41
CUX1-211ENST00000546411 HINFPQ9BQA5 517 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 ZBTB21Q9ULJ3 1066 aa17.61■□□□□ 0.41
CUX1-211ENST00000546411 USH1GQ495M9 461 aa17.6■□□□□ 0.41
CUX1-211ENST00000546411 FAM196AQ6ZSG2 479 aa17.6■□□□□ 0.41
CUX1-211ENST00000546411 GDAP1L1Q96MZ0 367 aa17.6■□□□□ 0.41
CUX1-211ENST00000546411 FAM207AQ9NSI2 230 aaPredicted RBP17.6■□□□□ 0.41
CUX1-211ENST00000546411 NEURL4Q96JN8 1562 aa17.6■□□□□ 0.41
CUX1-211ENST00000546411 CHMP2AO43633 222 aa17.6■□□□□ 0.41
CUX1-211ENST00000546411 LIFRP42702 1097 aa17.6■□□□□ 0.41
CUX1-211ENST00000546411 COL9A3Q14050 684 aaPredicted RBP17.6■□□□□ 0.41
CUX1-211ENST00000546411 PPP6R2O75170 966 aa17.6■□□□□ 0.41
CUX1-211ENST00000546411 MRPL12P52815 198 aaKnown RBP17.6■□□□□ 0.41
CUX1-211ENST00000546411 KRT83P78385 493 aa17.6■□□□□ 0.41
CUX1-211ENST00000546411 FMR1NBQ8N0W7 255 aaPredicted RBP17.6■□□□□ 0.41
CUX1-211ENST00000546411 OGFRQ9NZT2 677 aa17.6■□□□□ 0.41
CUX1-211ENST00000546411 TTF2Q9UNY4 1162 aaKnown RBP17.6■□□□□ 0.41
CUX1-211ENST00000546411 TNS3Q68CZ2 1445 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 GUCY1A2P33402 732 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 MECOMQ03112 1051 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 PPARDQ03181 441 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 DCAF17Q5H9S7 520 aaPredicted RBP17.59■□□□□ 0.41
CUX1-211ENST00000546411 MSL1Q68DK7 614 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 NEK11Q8NG66 645 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 RNF26Q9BY78 433 aaPredicted RBP17.59■□□□□ 0.41
CUX1-211ENST00000546411 PPP2R2CQ9Y2T4 447 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 DIP2BQ9P265 1576 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 USP17L3A6NCW0 530 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 USP17L4A6NCW7 530 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 FOXN1O15353 648 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 ERLIN2O94905 339 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 BTDP43251 543 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 SETQ01105 290 aaPredicted RBP17.59■□□□□ 0.41
CUX1-211ENST00000546411 TNIP1Q15025 636 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 USP17L1Q7RTZ2 530 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 OGFOD1Q8N543 542 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 CEP112Q8N8E3 955 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 ERMNQ8TAM6 284 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 FOXP1Q9H334 677 aaPredicted RBP17.59■□□□□ 0.41
CUX1-211ENST00000546411 SPATA31D1Q6ZQQ2 1576 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 RIMBP3CA6NJZ7 1639 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 RIMBP3BA6NNM3 1639 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 RIMBP3Q9UFD9 1639 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 TACC1O75410 805 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 SLC1A4P43007 532 aa17.59■□□□□ 0.41
CUX1-211ENST00000546411 DNAJC21Q5F1R6 531 aaKnown RBP17.58■□□□□ 0.41
CUX1-211ENST00000546411 WDR78Q5VTH9 848 aa17.58■□□□□ 0.41
CUX1-211ENST00000546411 FAM107BQ9H098 131 aa17.58■□□□□ 0.41
CUX1-211ENST00000546411 GSG1L2A8MUP6 293 aa17.58■□□□□ 0.41
CUX1-211ENST00000546411 CHMP4BP1P59074 171 aa17.58■□□□□ 0.41
CUX1-211ENST00000546411 DPP8Q6V1X1 898 aaPredicted RBP17.58■□□□□ 0.41
CUX1-211ENST00000546411 EHBP1Q8NDI1 1231 aa17.58■□□□□ 0.41
CUX1-211ENST00000546411 LRRC27Q9C0I9 530 aa17.58■□□□□ 0.41
CUX1-211ENST00000546411 CCDC113Q9H0I3 377 aa17.58■□□□□ 0.41
CUX1-211ENST00000546411 GOPCQ9HD26 462 aa17.58■□□□□ 0.41
CUX1-211ENST00000546411 MAN1B1Q9UKM7 699 aa17.58■□□□□ 0.41
CUX1-211ENST00000546411 MYO6Q9UM54 1294 aa17.58■□□□□ 0.41
CUX1-211ENST00000546411 CTDNEP1O95476 244 aa17.58■□□□□ 0.4
CUX1-211ENST00000546411 KIAA0825Q8IV33 1275 aa17.58■□□□□ 0.4
CUX1-211ENST00000546411 PLEKHA4Q9H4M7 779 aa17.58■□□□□ 0.4
CUX1-211ENST00000546411 PXDNQ92626 1479 aa17.58■□□□□ 0.4
CUX1-211ENST00000546411 TUBB4AP04350 444 aa17.58■□□□□ 0.4
CUX1-211ENST00000546411 HERC4Q5GLZ8 1057 aaPredicted RBP17.58■□□□□ 0.4
CUX1-211ENST00000546411 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.58■□□□□ 0.4
CUX1-211ENST00000546411 LY9Q9HBG7 655 aa17.58■□□□□ 0.4
CUX1-211ENST00000546411 SHPRHQ149N8 1683 aa17.58■□□□□ 0.4
CUX1-211ENST00000546411 PALLDQ8WX93 1383 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 PPP1R13BQ96KQ4 1090 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 NLRC4Q9NPP4 1024 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 PARP3Q9Y6F1 533 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 USP32Q8NFA0 1604 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 UBE2Q2LH0YL09 131 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 RAPGEF1Q13905 1077 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 CALCRLQ16602 461 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 SLC44A5Q8NCS7 719 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 USP27XA6NNY8 438 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 POTEB2H3BUK9 544 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 SP4Q02446 784 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 USP40Q9NVE5 1235 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 VPS18Q9P253 973 aa17.57■□□□□ 0.4
CUX1-211ENST00000546411 KCNJ18B7U540 433 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 TRIM28Q13263 835 aaKnown RBP17.56■□□□□ 0.4
CUX1-211ENST00000546411 MORC3Q14149 939 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 KCNJ12Q14500 433 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 USP17L2Q6R6M4 530 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 ATP8A2Q9NTI2 1148 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 CASP14P31944 242 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 CYP26C1Q6V0L0 522 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 KRT25Q7Z3Z0 450 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 SLC39A2Q9NP94 309 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 UTYO14607 1347 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 TMEM232C9JQI7 657 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 FDPSP14324 419 aaKnown RBP17.56■□□□□ 0.4
CUX1-211ENST00000546411 ADCY7P51828 1080 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 MAEAQ7L5Y9 396 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 UBN2Q6ZU65 1347 aa17.56■□□□□ 0.4
CUX1-211ENST00000546411 SPATA1Q5VX52 437 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms