RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 PARK7Q99497 189 aaKnown RBP8.69□□□□□ -1.02
VPS13D-211ENST00000543710 RABGAP1Q9Y3P9 1069 aa8.69□□□□□ -1.02
VPS13D-211ENST00000543710 MAGI3Q5TCQ9 1506 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 ARHGEF37A1IGU5 675 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 PTPDC1A2A3K4 754 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 A0A1B0GUA9 196 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 VAMP4O75379 141 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 AK2P54819 239 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 ASIC1P78348 528 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 TSNAXIP1Q2TAA8 658 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 PODNQ7Z5L7 613 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 DEFB132Q7Z7B7 95 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 ZNF274Q96GC6 653 aaPredicted RBP8.68□□□□□ -1.02
VPS13D-211ENST00000543710 TUBB6Q9BUF5 446 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 METTL22Q9BUU2 404 aaPredicted RBP8.68□□□□□ -1.02
VPS13D-211ENST00000543710 NT5C3AQ9H0P0 336 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 NEURL4Q96JN8 1562 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 TSPOAP1O95153 1857 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 DDAH1O94760 285 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 CYP7A1P22680 504 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 SSTR3P32745 418 aaPredicted RBP8.68□□□□□ -1.02
VPS13D-211ENST00000543710 DGKZQ13574 1117 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 PUM3Q15397 648 aaKnown RBP8.68□□□□□ -1.02
VPS13D-211ENST00000543710 C10orf76Q5T2E6 689 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 TRIM6Q9C030 488 aaPredicted RBP8.68□□□□□ -1.02
VPS13D-211ENST00000543710 XRCC6P12956 609 aaKnown RBP eCLIP8.68□□□□□ -1.024e-7■■■■■ 37.7
VPS13D-211ENST00000543710 HIBADHP31937 336 aaKnown RBP8.68□□□□□ -1.02
VPS13D-211ENST00000543710 EIF4A2Q14240 407 aaKnown RBP8.68□□□□□ -1.02
VPS13D-211ENST00000543710 RGS22Q8NE09 1264 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 UBA5Q9GZZ9 404 aa8.68□□□□□ -1.02
VPS13D-211ENST00000543710 SPINK5Q9NQ38 1064 aaPredicted RBP8.68□□□□□ -1.02
VPS13D-211ENST00000543710 RIMBP3CA6NJZ7 1639 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 RIMBP3BA6NNM3 1639 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 RIMBP3Q9UFD9 1639 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 SPDYE3A6NKU9 549 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 RNASELQ05823 741 aaKnown RBP8.67□□□□□ -1.02
VPS13D-211ENST00000543710 WDR44Q5JSH3 913 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 SLC26A4O43511 780 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 PAK1Q13153 545 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 INTS8Q75QN2 995 aaKnown RBP8.67□□□□□ -1.02
VPS13D-211ENST00000543710 EXOC8Q8IYI6 725 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 MFSD1Q9H3U5 465 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 DIS3Q9Y2L1 958 aaKnown RBP8.67□□□□□ -1.02
VPS13D-211ENST00000543710 SOS2Q07890 1332 aaPredicted RBP8.67□□□□□ -1.02
VPS13D-211ENST00000543710 BACH1O14867 736 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 CCT2P78371 535 aaKnown RBP8.67□□□□□ -1.02
VPS13D-211ENST00000543710 PPP1R9BQ96SB3 815 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 MED4Q9NPJ6 270 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 CHPF2Q9P2E5 772 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 SMTNP53814 917 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 ANO1Q5XXA6 986 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 KIAA1841Q6NSI8 718 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 CCDC186Q7Z3E2 898 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 MCF2L2Q86YR7 1114 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 NACA2Q9H009 215 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 TYW1Q9NV66 732 aaKnown RBP8.67□□□□□ -1.02
VPS13D-211ENST00000543710 THEGQ9P2T0 379 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 ARPP21Q9UBL0 812 aaPredicted RBP8.67□□□□□ -1.02
VPS13D-211ENST00000543710 FAN1Q9Y2M0 1017 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 SLC27A2O14975 620 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 ZBTB7BO15156 539 aaPredicted RBP8.67□□□□□ -1.02
VPS13D-211ENST00000543710 SEPT6Q14141 434 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 EZH2Q15910 746 aaKnown RBP8.67□□□□□ -1.02
VPS13D-211ENST00000543710 MAP7D1Q3KQU3 841 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 BRF1Q92994 677 aa8.67□□□□□ -1.02
VPS13D-211ENST00000543710 NEXMIFQ5QGS0 1516 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 MED23Q9ULK4 1368 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 SEMA3EO15041 775 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 GMNNO75496 209 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 LEO1Q8WVC0 666 aaPredicted RBP8.66□□□□□ -1.02
VPS13D-211ENST00000543710 MAK16Q9BXY0 300 aaKnown RBP8.66□□□□□ -1.02
VPS13D-211ENST00000543710 DACT1Q9NYF0 836 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 PI4KAP2A4QPH2 592 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 SEPT2Q15019 361 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 GNPTABQ3T906 1256 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 TEX11Q8IYF3 940 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 PI4KAP1Q8N8J0 262 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 RAB3IL1Q8TBN0 382 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 EFCC1Q9HA90 598 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 THAP12O43422 761 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 SLC8A1P32418 973 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 AAK1Q2M2I8 961 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 SLC9C1Q4G0N8 1177 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 LMBR1LQ6UX01 489 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 CCDC84Q86UT8 332 aaPredicted RBP8.66□□□□□ -1.02
VPS13D-211ENST00000543710 FERMT3Q86UX7 667 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 NCAPG2Q86XI2 1143 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 ELMOD1Q8N336 334 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 TRIM11Q96F44 468 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 DDX23Q9BUQ8 820 aaKnown RBP8.66□□□□□ -1.02
VPS13D-211ENST00000543710 SPZ1Q9BXG8 430 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 SYNCQ9H7C4 482 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 RNF14Q9UBS8 474 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 ADD3Q9UEY8 706 aaKnown RBP8.66□□□□□ -1.02
VPS13D-211ENST00000543710 CIAO1O76071 339 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 PHBP35232 272 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 NOGQ13253 232 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 STMN2Q93045 179 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 CSRNP1Q96S65 589 aa8.66□□□□□ -1.02
VPS13D-211ENST00000543710 PIDD1Q9HB75 910 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms