RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 USP49Q70CQ1 688 aa15.92■□□□□ 0.14
MSH2-206ENST00000543555 ACTN4O43707 911 aaKnown RBP15.91■□□□□ 0.14
MSH2-206ENST00000543555 BMP15O95972 392 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 BMP6P22004 513 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 NT5DC1Q5TFE4 455 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 DGKHQ86XP1 1220 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 DYNLL2Q96FJ2 89 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 MAN1B1Q9UKM7 699 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 LDHCP07864 332 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 PRR29P0C7W0 189 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 ATP1A3P13637 1013 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 ST5P78524 1137 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 PFKFB3Q16875 520 aaPredicted RBP15.91■□□□□ 0.14
MSH2-206ENST00000543555 KANK3Q6NY19 840 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 C16orf45Q96MC5 204 aaPredicted RBP15.91■□□□□ 0.14
MSH2-206ENST00000543555 KAT14Q9H8E8 782 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 IL17RBQ9NRM6 502 aa15.91■□□□□ 0.14
MSH2-206ENST00000543555 WNT7AO00755 349 aa15.9■□□□□ 0.14
MSH2-206ENST00000543555 UFL1O94874 794 aa15.9■□□□□ 0.14
MSH2-206ENST00000543555 SARSP49591 514 aaKnown RBP15.9■□□□□ 0.14
MSH2-206ENST00000543555 TMC6Q7Z403 805 aa15.9■□□□□ 0.14
MSH2-206ENST00000543555 AMOTL1Q8IY63 956 aa15.9■□□□□ 0.14
MSH2-206ENST00000543555 PDILTQ8N807 584 aa15.9■□□□□ 0.14
MSH2-206ENST00000543555 ANKS1AQ92625 1134 aa15.9■□□□□ 0.14
MSH2-206ENST00000543555 ATP2B4P23634 1241 aa15.9■□□□□ 0.14
MSH2-206ENST00000543555 HSP90AA2PQ14568 343 aaPredicted RBP15.9■□□□□ 0.14
MSH2-206ENST00000543555 NOM1Q5C9Z4 860 aaKnown RBP15.9■□□□□ 0.14
MSH2-206ENST00000543555 NLGN1Q8N2Q7 840 aa15.9■□□□□ 0.14
MSH2-206ENST00000543555 FERMT2Q96AC1 680 aa15.9■□□□□ 0.14
MSH2-206ENST00000543555 CD209Q9NNX6 404 aa15.9■□□□□ 0.14
MSH2-206ENST00000543555 NLRP5P59047 1200 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 RBM10P98175 930 aaKnown RBP15.89■□□□□ 0.13
MSH2-206ENST00000543555 TTC38Q5R3I4 469 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 TGFBRAP1Q8WUH2 860 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 SMARCE1Q969G3 411 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 RTFDC1Q9BY42 306 aaPredicted RBP15.89■□□□□ 0.13
MSH2-206ENST00000543555 MKNK2Q9HBH9 465 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 MYO1BO43795 1136 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 TPD52L1Q16890 204 aaPredicted RBP15.89■□□□□ 0.13
MSH2-206ENST00000543555 CCDC150Q8NCX0 1101 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 PNMA1Q8ND90 353 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 RBM17Q96I25 401 aaKnown RBP15.89■□□□□ 0.13
MSH2-206ENST00000543555 GGA1Q9UJY5 639 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 GRAMD1CQ8IYS0 662 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 TRIML1Q8N9V2 468 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 PARP3Q9Y6F1 533 aa15.89■□□□□ 0.13
MSH2-206ENST00000543555 TNNT1P13805 278 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 IL1R1P14778 569 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 VEGFAP15692 232 aaPredicted RBP15.88■□□□□ 0.13
MSH2-206ENST00000543555 MORC3Q14149 939 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 ZNF174Q15697 407 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 CCDC178Q5BJE1 867 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 CERS3Q8IU89 383 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 NAV1Q8NEY1 1877 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 CBFA2T2O43439 604 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 DHX8Q14562 1220 aaKnown RBP15.88■□□□□ 0.13
MSH2-206ENST00000543555 MLKLQ8NB16 471 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 SPATA20Q8TB22 786 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 EPSTI1Q96J88 318 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 FANCLQ9NW38 375 aa15.88■□□□□ 0.13
MSH2-206ENST00000543555 A0A087X0B3 334 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 RIOK3O14730 519 aaKnown RBP15.87■□□□□ 0.13
MSH2-206ENST00000543555 SERPINC1P01008 464 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 CHRNA5P30532 468 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 TRAPPC10P48553 1259 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 UBASH3AP57075 661 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 GRM4Q14833 912 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 ARMCX5Q6P1M9 558 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 MAPKAPK5Q8IW41 473 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 DHX58Q96C10 678 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 TCP11L1Q9NUJ3 509 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 DACH1Q9UI36 760 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 USP17L3A6NCW0 530 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 USP17L4A6NCW7 530 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 BBOX1O75936 387 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 TSPY3P0CV98 308 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 TSPY8P0CW00 308 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 BTDP43251 543 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 PLCD1P51178 756 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 ATP2C1P98194 919 aaPredicted RBP15.87■□□□□ 0.13
MSH2-206ENST00000543555 PIK3AP1Q6ZUJ8 805 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 USP17L1Q7RTZ2 530 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 SLC44A5Q8NCS7 719 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 DPF2Q92785 391 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 SYMPKQ92797 1274 aaKnown RBP15.87■□□□□ 0.13
MSH2-206ENST00000543555 CCDC34Q96HJ3 373 aa15.87■□□□□ 0.13
MSH2-206ENST00000543555 USP27XA6NNY8 438 aa15.86■□□□□ 0.13
MSH2-206ENST00000543555 ZNF444Q8N0Y2 327 aaPredicted RBP15.86■□□□□ 0.13
MSH2-206ENST00000543555 STAG2Q8N3U4 1231 aa15.86■□□□□ 0.13
MSH2-206ENST00000543555 KCND1Q9NSA2 647 aa15.86■□□□□ 0.13
MSH2-206ENST00000543555 SAP30BPQ9UHR5 308 aaKnown RBP15.86■□□□□ 0.13
MSH2-206ENST00000543555 GPR75-ASB3A0A0A6YYF3 556 aa15.86■□□□□ 0.13
MSH2-206ENST00000543555 SLFN14P0C7P3 912 aa15.86■□□□□ 0.13
MSH2-206ENST00000543555 SFPQP23246 707 aaKnown RBP eCLIP15.86■□□□□ 0.13
MSH2-206ENST00000543555 CALML3P27482 149 aa15.86■□□□□ 0.13
MSH2-206ENST00000543555 HOXA10P31260 410 aaPredicted RBP15.86■□□□□ 0.13
MSH2-206ENST00000543555 GNAQP50148 359 aa15.86■□□□□ 0.13
MSH2-206ENST00000543555 PTGDRQ13258 359 aa15.86■□□□□ 0.13
MSH2-206ENST00000543555 PODXL2Q9NZ53 605 aa15.86■□□□□ 0.13
MSH2-206ENST00000543555 ZNF622Q969S3 477 aaKnown RBP eCLIP15.86■□□□□ 0.131e-7■■■□□ 16.2
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms