RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-210ENST00000542817 BRPF3Q9ULD4 1205 aa12.56□□□□□ -0.4
NPIPB3-210ENST00000542817 STX8Q9UNK0 236 aa12.56□□□□□ -0.4
NPIPB3-210ENST00000542817 TESPA1A2RU30 521 aaPredicted RBP12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 USP17L10C9JJH3 530 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 CXCL11O14625 94 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 IFIT3O14879 490 aaKnown RBP12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 ZBTB48P10074 688 aaPredicted RBP12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 TOP1P11387 765 aaKnown RBP12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 HSPA6P17066 643 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 TROAPQ12815 778 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 SLC35G1Q2M3R5 365 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 TMEM67Q5HYA8 995 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 POTEEQ6S8J3 1075 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 IQCA1Q86XH1 822 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 BRI3BPQ8WY22 251 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 LARP6Q9BRS8 491 aaKnown RBP12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 TBC1D2Q9BYX2 928 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 UPF2Q9HAU5 1272 aaKnown RBP12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 SYNPO2Q9UMS6 1093 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 CYP46A1Q9Y6A2 500 aa12.55□□□□□ -0.4
NPIPB3-210ENST00000542817 F5H6K3 240 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 AOC2O75106 756 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 NDUFB10O96000 172 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 AK2P54819 239 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 HMGCS2P54868 508 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 KLRC3Q07444 240 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 DEFB115Q30KQ5 88 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 TREML2Q5T2D2 321 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 DNAJC5GQ8N7S2 189 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 GMCL1P1Q8NEA9 526 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 UBAC1Q9BSL1 405 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 VCPKMTQ9H867 229 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 FAM217BQ9NTX9 383 aaPredicted RBP12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 PDRG1Q9NUG6 133 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 TPCN1Q9ULQ1 816 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 HPS5Q9UPZ3 1129 aa12.54□□□□□ -0.4
NPIPB3-210ENST00000542817 LOC285556D6RIA3 1793 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 MYH4Q9Y623 1939 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 PDHBP11177 359 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 VEGFBP49765 207 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 NEK4P51957 841 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 ATP2B2Q01814 1243 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 APOBRQ0VD83 1088 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 ST3GAL1Q11201 340 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 WTAPQ15007 396 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 RABEP1Q15276 862 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 CCDC178Q5BJE1 867 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 IFIT1BQ5T764 474 aaKnown RBP12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 PNMA1Q8ND90 353 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 BRF1Q92994 677 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 CCDC102AQ96A19 550 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 CAPNS2Q96L46 248 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 NUP88Q99567 741 aaPredicted RBP12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 MYL10Q9BUA6 226 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 AS3MTQ9HBK9 375 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 ARHGEF10LQ9HCE6 1279 aa12.53□□□□□ -0.4
NPIPB3-210ENST00000542817 HTTP42858 3142 aa12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 C19orf81C9J6K1 198 aa12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 IGF2BP3O00425 579 aaKnown RBP eCLIP12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 LARGE1O95461 756 aa12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 VCAM1P19320 739 aa12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 ZYXQ15942 572 aaKnown RBP12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 SLFN13Q68D06 897 aa12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 USP17L2Q6R6M4 530 aa12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 SPICE1Q8N0Z3 855 aa12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 GMCL1Q96IK5 515 aa12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 RLFQ13129 1914 aa12.52□□□□□ -0.41
NPIPB3-210ENST00000542817 THSD7BQ9C0I4 1608 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 NID2Q14112 1375 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 PALM3A6NDB9 673 aaPredicted RBP12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 BTBD19C9JJ37 291 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 RXRAP19793 462 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 PDIA3P30101 505 aaKnown RBP12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 TM4SF4P48230 202 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 GTF2A2P52657 109 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 KIF23Q02241 960 aaPredicted RBP12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 SNAPC2Q13487 334 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 TTBK2Q6IQ55 1244 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 APOA5Q6Q788 366 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 RAB11FIP4Q86YS3 637 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 ZNF654Q8IZM8 581 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 FAM43AQ8N2R8 423 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 STAG2Q8N3U4 1231 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 PROCA1Q8NCQ7 364 aaPredicted RBP12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 CHMP4CQ96CF2 233 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 MAD2L2Q9UI95 211 aa12.51□□□□□ -0.41
NPIPB3-210ENST00000542817 WDR33Q9C0J8 1336 aaKnown RBP12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 CCL15-CCL14A0A0B4J2E2 113 aa12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 HOXA7P31268 230 aaPredicted RBP12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 USP14P54578 494 aa12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 ZNF543Q08ER8 600 aa12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 FUT2Q10981 343 aa12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 GRM4Q14833 912 aa12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 SART3Q15020 963 aaKnown RBP12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 CCL15Q16663 113 aa12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 PPP4R3BQ5MIZ7 849 aa12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 NBPF11Q86T75 865 aa12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 TMTC2Q8N394 836 aa12.5□□□□□ -0.41
NPIPB3-210ENST00000542817 LPAR1Q92633 364 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms