RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 SH2D4AQ9H788 454 aa14.72□□□□□ -0.05
VPS33A-207ENST00000542790 ARHGEF10LQ9HCE6 1279 aa14.72□□□□□ -0.05
VPS33A-207ENST00000542790 MYH7P12883 1935 aa14.72□□□□□ -0.05
VPS33A-207ENST00000542790 TLR2O60603 784 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 FGRP09769 529 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 PCP11498 1178 aaKnown RBP14.71□□□□□ -0.05
VPS33A-207ENST00000542790 TREML2Q5T2D2 321 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 CASC1Q6TDU7 716 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 FBXO22Q8NEZ5 403 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 ACER1Q8TDN7 264 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 C12orf42Q96LP6 360 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.71□□□□□ -0.05
VPS33A-207ENST00000542790 IL25Q9H293 177 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 EMILIN3Q9NT22 766 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 PNMA3Q9UL41 463 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 NAV1Q8NEY1 1877 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 CDK5RAP2Q96SN8 1893 aa14.71□□□□□ -0.05
VPS33A-207ENST00000542790 A0A1W2PRG0 241 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 ORC4O43929 436 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 FKTNO75072 461 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 TSPY3P0CV98 308 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 TSPY8P0CW00 308 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 EEF2P13639 858 aaKnown RBP14.7□□□□□ -0.06
VPS33A-207ENST00000542790 OSBPP22059 807 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 TFAP4Q01664 338 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 ZYXQ15942 572 aaKnown RBP14.7□□□□□ -0.06
VPS33A-207ENST00000542790 IMMTQ16891 758 aaKnown RBP14.7□□□□□ -0.06
VPS33A-207ENST00000542790 MFSD6Q6ZSS7 791 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 KIAA1211Q6ZU35 1233 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 SIAH1Q8IUQ4 282 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 HS6ST3Q8IZP7 471 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 NEDD1Q8NHV4 660 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 ZNF296Q8WUU4 475 aaPredicted RBP14.7□□□□□ -0.06
VPS33A-207ENST00000542790 RNF41Q9H4P4 317 aaPredicted RBP14.7□□□□□ -0.06
VPS33A-207ENST00000542790 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.7□□□□□ -0.06
VPS33A-207ENST00000542790 MYH1P12882 1939 aa14.7□□□□□ -0.06
VPS33A-207ENST00000542790 CDC45O75419 566 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 CYP2C8P10632 490 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 HOXA7P31268 230 aaPredicted RBP14.69□□□□□ -0.06
VPS33A-207ENST00000542790 NT5C2P49902 561 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 HAND2P61296 217 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 ATP2B2Q01814 1243 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 DGKZQ13574 1117 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 FAM47AQ5JRC9 791 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 PPP4R3BQ5MIZ7 849 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 AKNAD1Q5T1N1 836 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 SMCR8Q8TEV9 937 aaPredicted RBP14.69□□□□□ -0.06
VPS33A-207ENST00000542790 INCENPQ9NQS7 918 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 TOMM22Q9NS69 142 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 NYAP2Q9P242 653 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 TMX2Q9Y320 296 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 DOCK1Q14185 1865 aa14.69□□□□□ -0.06
VPS33A-207ENST00000542790 IGKV6D-41A0A0C4DH26 115 aa14.68□□□□□ -0.06
VPS33A-207ENST00000542790 TSPY2A6NKD2 308 aa14.68□□□□□ -0.06
VPS33A-207ENST00000542790 RANBP6O60518 1105 aaKnown RBP14.68□□□□□ -0.06
VPS33A-207ENST00000542790 IRX3P78415 501 aaPredicted RBP14.68□□□□□ -0.06
VPS33A-207ENST00000542790 SP3Q02447 781 aa14.68□□□□□ -0.06
VPS33A-207ENST00000542790 COL13A1Q5TAT6 717 aaPredicted RBP14.68□□□□□ -0.06
VPS33A-207ENST00000542790 C17orf99Q6UX52 265 aa14.68□□□□□ -0.06
VPS33A-207ENST00000542790 CLEC10AQ8IUN9 316 aa14.68□□□□□ -0.06
VPS33A-207ENST00000542790 STAG1Q8WVM7 1258 aa14.68□□□□□ -0.06
VPS33A-207ENST00000542790 LPAR1Q92633 364 aa14.68□□□□□ -0.06
VPS33A-207ENST00000542790 ESYT1Q9BSJ8 1104 aa14.68□□□□□ -0.06
VPS33A-207ENST00000542790 RTN4Q9NQC3 1192 aaKnown RBP14.68□□□□□ -0.06
VPS33A-207ENST00000542790 MTMR4Q9NYA4 1195 aa14.68□□□□□ -0.06
VPS33A-207ENST00000542790 USP17L15C9J2P7 530 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 USP17L13C9JLJ4 530 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 USP17L11C9JVI0 530 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 USP17L18D6R9N7 530 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 USP17L22D6RA61 530 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 USP17L17D6RBQ6 530 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 USP17L19D6RCP7 530 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 USP17L20D6RJB6 530 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 TTLL1O95922 423 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 VCAM1P19320 739 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 PTH1RQ03431 593 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 USP17L24Q0WX57 530 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 RRP12Q5JTH9 1297 aaKnown RBP14.67□□□□□ -0.06
VPS33A-207ENST00000542790 MAP4K1Q92918 833 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 MKL1Q969V6 931 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 CEP95Q96GE4 821 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 ERO1AQ96HE7 468 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 ASCC2Q9H1I8 757 aaPredicted RBP14.67□□□□□ -0.06
VPS33A-207ENST00000542790 VCPKMTQ9H867 229 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 GOPCQ9HD26 462 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 CLIP2Q9UDT6 1046 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 CPA4Q9UI42 421 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 SYNPO2Q9UMS6 1093 aa14.67□□□□□ -0.06
VPS33A-207ENST00000542790 PLIN4Q96Q06 1357 aa14.66□□□□□ -0.06
VPS33A-207ENST00000542790 GCLCP48506 637 aaPredicted RBP14.66□□□□□ -0.06
VPS33A-207ENST00000542790 ARHGEF6Q15052 776 aa14.66□□□□□ -0.06
VPS33A-207ENST00000542790 TBC1D10CQ8IV04 446 aa14.66□□□□□ -0.06
VPS33A-207ENST00000542790 ESR2Q92731 530 aa14.66□□□□□ -0.06
VPS33A-207ENST00000542790 NBPF3Q9H094 633 aa14.66□□□□□ -0.06
VPS33A-207ENST00000542790 RPAP3Q9H6T3 665 aaPredicted RBP14.66□□□□□ -0.06
VPS33A-207ENST00000542790 BOLA1Q9Y3E2 137 aa14.66□□□□□ -0.06
VPS33A-207ENST00000542790 TACC3Q9Y6A5 838 aa14.66□□□□□ -0.06
VPS33A-207ENST00000542790 PCNTO95613 3336 aa14.66□□□□□ -0.06
VPS33A-207ENST00000542790 ADGRA2Q96PE1 1338 aa14.66□□□□□ -0.06
VPS33A-207ENST00000542790 BCRP11274 1271 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms