RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 TICAM2Q86XR7 235 aa15.92■□□□□ 0.14
COLCA1-204ENST00000540738 CRAMP1Q96RY5 1269 aa15.92■□□□□ 0.14
COLCA1-204ENST00000540738 ZNF277Q9NRM2 450 aaPredicted RBP15.92■□□□□ 0.14
COLCA1-204ENST00000540738 VPS54Q9P1Q0 977 aa15.92■□□□□ 0.14
COLCA1-204ENST00000540738 FMNL1O95466 1100 aaPredicted RBP15.92■□□□□ 0.14
COLCA1-204ENST00000540738 SCG2P13521 617 aa15.92■□□□□ 0.14
COLCA1-204ENST00000540738 AOC3Q16853 763 aa15.92■□□□□ 0.14
COLCA1-204ENST00000540738 HERC4Q5GLZ8 1057 aaPredicted RBP15.92■□□□□ 0.14
COLCA1-204ENST00000540738 GIMAP6Q6P9H5 292 aa15.92■□□□□ 0.14
COLCA1-204ENST00000540738 MARCH10Q8NA82 808 aaPredicted RBP15.92■□□□□ 0.14
COLCA1-204ENST00000540738 MINPP1Q9UNW1 487 aa15.92■□□□□ 0.14
COLCA1-204ENST00000540738 PPRC1Q5VV67 1664 aaKnown RBP15.92■□□□□ 0.14
COLCA1-204ENST00000540738 FAM200AQ8TCP9 573 aa15.92■□□□□ 0.14
COLCA1-204ENST00000540738 CD209Q9NNX6 404 aa15.92■□□□□ 0.14
COLCA1-204ENST00000540738 CCDC91Q7Z6B0 441 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 MTERF4Q7Z6M4 381 aaKnown RBP15.91■□□□□ 0.14
COLCA1-204ENST00000540738 PLA2G4DQ86XP0 818 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 TPH2Q8IWU9 490 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 CDC37L1Q7L3B6 337 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 PALD1Q9ULE6 856 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 P4HA1P13674 534 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 STAT2P52630 851 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 CABP7Q86V35 215 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 PLCD3Q8N3E9 789 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.91■□□□□ 0.14
COLCA1-204ENST00000540738 STAP2Q9UGK3 403 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 PTPRUQ92729 1446 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 FAM160A1Q05DH4 1040 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 C8orf34Q49A92 452 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 TMEM179Q6ZVK1 233 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 FAM193BQ96PV7 902 aaPredicted RBP15.91■□□□□ 0.14
COLCA1-204ENST00000540738 KCNH3Q9ULD8 1083 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 MED14O60244 1454 aa15.91■□□□□ 0.14
COLCA1-204ENST00000540738 PRR16Q569H4 304 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 EXOC8Q8IYI6 725 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 SPICE1Q8N0Z3 855 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 MECOMQ03112 1051 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 DYNLL1P63167 89 aaKnown RBP15.9■□□□□ 0.14
COLCA1-204ENST00000540738 NEK8Q86SG6 692 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 ZMYM6O95789 1325 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 SLC15A2Q16348 729 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 E9PCH4 1651 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 PIK3C2BO00750 1634 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 ZBTB24O43167 697 aaPredicted RBP15.9■□□□□ 0.14
COLCA1-204ENST00000540738 EEF2P13639 858 aaKnown RBP15.9■□□□□ 0.14
COLCA1-204ENST00000540738 POLA2Q14181 598 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 DIXDC1Q155Q3 683 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 ANO6Q4KMQ2 910 aa15.9■□□□□ 0.14
COLCA1-204ENST00000540738 TRIM28Q13263 835 aaKnown RBP15.89■□□□□ 0.13
COLCA1-204ENST00000540738 KIAA0753Q2KHM9 967 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 MIGA2Q7L4E1 593 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 MAEAQ7L5Y9 396 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 TSNARE1Q96NA8 513 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 FBXO40Q9UH90 709 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 ZNRF3Q9ULT6 936 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 YWHAEP62258 255 aaKnown RBP15.89■□□□□ 0.13
COLCA1-204ENST00000540738 VWA3BQ502W6 1294 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 GOLGA8HP0CJ92 632 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 ZNF771Q7L3S4 317 aaPredicted RBP15.89■□□□□ 0.13
COLCA1-204ENST00000540738 ATP6V0A1Q93050 837 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 CRACR2AQ9BSW2 395 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 ISCA1Q9BUE6 129 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 KCNJ14Q9UNX9 436 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 SETD1BQ9UPS6 1966 aaKnown RBP15.89■□□□□ 0.13
COLCA1-204ENST00000540738 DIP2AQ14689 1571 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 RASGRF1Q13972 1273 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 TFDP1Q14186 410 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 UTP14CQ5TAP6 766 aaKnown RBP15.89■□□□□ 0.13
COLCA1-204ENST00000540738 SEC62Q99442 399 aaKnown RBP15.89■□□□□ 0.13
COLCA1-204ENST00000540738 PCDHA12Q9UN75 941 aa15.89■□□□□ 0.13
COLCA1-204ENST00000540738 CD163L1Q9NR16 1453 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 URI1O94763 535 aaPredicted RBP15.88■□□□□ 0.13
COLCA1-204ENST00000540738 KRT83P78385 493 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 UBXN1Q04323 297 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 AOPEPQ8N6M6 819 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 SELENOOQ9BVL4 669 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 XKR9Q5GH70 373 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 RGS22Q8NE09 1264 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 COA7Q96BR5 231 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 NACA2Q9H009 215 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 EXOC3O60645 756 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 KRT5P13647 590 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 YARSP54577 528 aaKnown RBP15.88■□□□□ 0.13
COLCA1-204ENST00000540738 MKRN3Q13064 507 aaKnown RBP15.88■□□□□ 0.13
COLCA1-204ENST00000540738 CCDC42Q96M95 316 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 RTEL1Q9NZ71 1219 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 ZHX1Q9UKY1 873 aaPredicted RBP15.88■□□□□ 0.13
COLCA1-204ENST00000540738 SUGT1Q9Y2Z0 365 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 PCDHB13Q9Y5F0 798 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 hCG_1642624A0A1W2PR95 340 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 MYZAPP0CAP1 466 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 STX17P56962 302 aa15.88■□□□□ 0.13
COLCA1-204ENST00000540738 MRPL44Q9H9J2 332 aaKnown RBP15.88■□□□□ 0.13
COLCA1-204ENST00000540738 FBXO41Q8TF61 875 aa15.87■□□□□ 0.13
COLCA1-204ENST00000540738 SYDE2Q5VT97 1194 aa15.87■□□□□ 0.13
COLCA1-204ENST00000540738 CELF1Q92879 486 aaKnown RBP15.87■□□□□ 0.13
COLCA1-204ENST00000540738 HOXC10Q9NYD6 342 aa15.87■□□□□ 0.13
COLCA1-204ENST00000540738 RNF169Q8NCN4 708 aa15.87■□□□□ 0.13
COLCA1-204ENST00000540738 PRPF6O94906 941 aaKnown RBP15.87■□□□□ 0.13
COLCA1-204ENST00000540738 IFFO1Q0D2I5 559 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms