RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 GREB1LQ9C091 1923 aaPredicted RBP23.66■■□□□ 1.38
SMPDL3A-203ENST00000539041 ATP2B1P20020 1258 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 NLRP5P59047 1200 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 EARS2Q5JPH6 523 aaKnown RBP23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 PODNQ7Z5L7 613 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 MXD3Q9BW11 206 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 SH3GLB2Q9NR46 395 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 KCNH3Q9ULD8 1083 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 A0A087WWV3 80 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 ZNF500O60304 480 aaPredicted RBP23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 BMP15O95972 392 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 NLRP12P59046 1061 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 PICALMQ13492 652 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 HHIPL2Q6UWX4 724 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 STK32BQ9NY57 414 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 PLIN4Q96Q06 1357 aa23.65■■□□□ 1.38
SMPDL3A-203ENST00000539041 EZH2Q15910 746 aaKnown RBP23.64■■□□□ 1.37
SMPDL3A-203ENST00000539041 FBXO41Q8TF61 875 aa23.64■■□□□ 1.37
SMPDL3A-203ENST00000539041 PIBF1Q8WXW3 757 aa23.64■■□□□ 1.37
SMPDL3A-203ENST00000539041 LZTS2Q9BRK4 669 aa23.64■■□□□ 1.37
SMPDL3A-203ENST00000539041 SIPA1L1O43166 1804 aa23.64■■□□□ 1.37
SMPDL3A-203ENST00000539041 PALM3A6NDB9 673 aaPredicted RBP23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 BECN2A8MW95 431 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 GOLGA6L6A8MZA4 724 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 CALML3P27482 149 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 ZNF75DP51815 510 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 KRBA2Q6ZNG9 492 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 PLA2G4DQ86XP0 818 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 DHX40Q8IX18 779 aaKnown RBP23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 TEKT1Q969V4 418 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 CAMKK2Q96RR4 588 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 USP40Q9NVE5 1235 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 TPM3P06753 285 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 SCNN1DP51172 638 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 GRIN1Q05586 938 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 SARM1Q6SZW1 724 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 ELOA2Q8IYF1 753 aaPredicted RBP23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 CNKSR1Q969H4 720 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 BPIFA3Q9BQP9 254 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 TRIM5Q9C035 493 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 DBNDD1Q9H9R9 158 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 TUBE1Q9UJT0 475 aa23.63■■□□□ 1.37
SMPDL3A-203ENST00000539041 TOP1P11387 765 aaKnown RBP23.62■■□□□ 1.37
SMPDL3A-203ENST00000539041 FKBP1AP62942 108 aaKnown RBP23.62■■□□□ 1.37
SMPDL3A-203ENST00000539041 GABPAQ06546 454 aa23.62■■□□□ 1.37
SMPDL3A-203ENST00000539041 TTC38Q5R3I4 469 aa23.62■■□□□ 1.37
SMPDL3A-203ENST00000539041 DDX4Q9NQI0 724 aaKnown RBP23.62■■□□□ 1.37
SMPDL3A-203ENST00000539041 RGS17Q9UGC6 210 aaPredicted RBP23.62■■□□□ 1.37
SMPDL3A-203ENST00000539041 VEGFAP15692 232 aaPredicted RBP23.61■■□□□ 1.37
SMPDL3A-203ENST00000539041 NOVP48745 357 aa23.61■■□□□ 1.37
SMPDL3A-203ENST00000539041 EN1Q05925 392 aaPredicted RBP23.61■■□□□ 1.37
SMPDL3A-203ENST00000539041 DPCR1Q3MIW9 517 aa23.61■■□□□ 1.37
SMPDL3A-203ENST00000539041 SPECC1Q5M775 1068 aa23.61■■□□□ 1.37
SMPDL3A-203ENST00000539041 AOPEPQ8N6M6 819 aa23.61■■□□□ 1.37
SMPDL3A-203ENST00000539041 CNNM3Q8NE01 707 aa23.61■■□□□ 1.37
SMPDL3A-203ENST00000539041 CEP95Q96GE4 821 aa23.61■■□□□ 1.37
SMPDL3A-203ENST00000539041 TRAPPC10P48553 1259 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 LONRF3Q496Y0 759 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 POTEAQ6S8J7 498 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 MTMR7Q9Y216 660 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 MYO3BQ8WXR4 1341 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 CHRNA5P30532 468 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 SLC35G1Q2M3R5 365 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 NOM1Q5C9Z4 860 aaKnown RBP23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 CDC42EP5Q6NZY7 148 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 METTL16Q86W50 562 aaKnown RBP23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 BLIDQ8IZY5 108 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 SPC24Q8NBT2 197 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 GPKOWQ92917 476 aaPredicted RBP eCLIP23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 SPZ1Q9BXG8 430 aa23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 OSBPL5Q9H0X9 879 aaPredicted RBP23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 HOOK1Q9UJC3 728 aaKnown RBP23.6■■□□□ 1.37
SMPDL3A-203ENST00000539041 BIN1O00499 593 aa23.59■■□□□ 1.37
SMPDL3A-203ENST00000539041 CYTH3O43739 400 aa23.59■■□□□ 1.37
SMPDL3A-203ENST00000539041 PARP1P09874 1014 aaKnown RBP23.59■■□□□ 1.37
SMPDL3A-203ENST00000539041 CRKP46108 304 aa23.59■■□□□ 1.37
SMPDL3A-203ENST00000539041 CCDC148Q8NFR7 591 aa23.59■■□□□ 1.37
SMPDL3A-203ENST00000539041 FERMT2Q96AC1 680 aa23.59■■□□□ 1.37
SMPDL3A-203ENST00000539041 CSRNP2Q9H175 543 aa23.59■■□□□ 1.37
SMPDL3A-203ENST00000539041 SWAP70Q9UH65 585 aa23.59■■□□□ 1.37
SMPDL3A-203ENST00000539041 PCDHA4Q9UN74 947 aa23.59■■□□□ 1.37
SMPDL3A-203ENST00000539041 C10orf71Q711Q0 1435 aa23.59■■□□□ 1.37
SMPDL3A-203ENST00000539041 ECE2O60344 883 aa23.58■■□□□ 1.37
SMPDL3A-203ENST00000539041 CDC25BP30305 580 aa23.58■■□□□ 1.37
SMPDL3A-203ENST00000539041 PNOCQ13519 176 aa23.58■■□□□ 1.37
SMPDL3A-203ENST00000539041 STRIP1Q5VSL9 837 aa23.58■■□□□ 1.37
SMPDL3A-203ENST00000539041 APOBEC3HQ6NTF7 200 aaKnown RBP23.58■■□□□ 1.37
SMPDL3A-203ENST00000539041 PIK3AP1Q6ZUJ8 805 aa23.58■■□□□ 1.37
SMPDL3A-203ENST00000539041 FAM177A1Q8N128 213 aaPredicted RBP23.58■■□□□ 1.37
SMPDL3A-203ENST00000539041 KLRF2D3W0D1 207 aa23.57■■□□□ 1.36
SMPDL3A-203ENST00000539041 WNT7AO00755 349 aa23.57■■□□□ 1.36
SMPDL3A-203ENST00000539041 ZNF174Q15697 407 aa23.57■■□□□ 1.36
SMPDL3A-203ENST00000539041 ZNF830Q96NB3 372 aaPredicted RBP23.57■■□□□ 1.36
SMPDL3A-203ENST00000539041 MRIQ9BWK5 157 aa23.57■■□□□ 1.36
SMPDL3A-203ENST00000539041 ZNF219Q9P2Y4 722 aaPredicted RBP23.57■■□□□ 1.36
SMPDL3A-203ENST00000539041 SMARCA1P28370 1054 aa23.57■■□□□ 1.36
SMPDL3A-203ENST00000539041 KIAA2012Q0VF49 1180 aa23.57■■□□□ 1.36
SMPDL3A-203ENST00000539041 WWC2Q6AWC2 1192 aa23.57■■□□□ 1.36
SMPDL3A-203ENST00000539041 GALNT17Q6IS24 598 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms