RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ATP2C1P98194 919 aaPredicted RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 NR5A1Q13285 461 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 ORC2Q13416 577 aaPredicted RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 TTC38Q5R3I4 469 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 FAM182BQ5T319 152 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 ARL6IP4Q66PJ3 421 aaKnown RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 C16orf86Q6ZW13 317 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 SMIM5Q71RC9 77 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 METTL16Q86W50 562 aaKnown RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 NLGN1Q8N2Q7 840 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 CCDC24Q8N4L8 307 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 CCDC82Q8N4S0 544 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 SRBD1Q8N5C6 995 aaKnown RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 DAGLBQ8NCG7 672 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 CCDC112Q8NEF3 446 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 TBC1D16Q8TBP0 767 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 SH3RF3Q8TEJ3 882 aaPredicted RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 TNFRSF25Q93038 417 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 ZNF830Q96NB3 372 aaPredicted RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 MAP7D2Q96T17 732 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 SPZ1Q9BXG8 430 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 COA1Q9GZY4 146 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 QTRT2Q9H974 415 aaKnown RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 PCDHB6Q9Y5E3 794 aa7.57□□□□□ -1.2
USP28-206ENST00000538224 ZNF646O15015 1829 aaPredicted RBP7.57□□□□□ -1.2
USP28-206ENST00000538224 FLT1P17948 1338 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 POLR2DO15514 142 aaKnown RBP7.56□□□□□ -1.2
USP28-206ENST00000538224 TUBB4AP04350 444 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 USP17L8P0C7I0 530 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 CYP2D6P10635 497 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 NPR1P16066 1061 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 ERCC5P28715 1186 aaPredicted RBP7.56□□□□□ -1.2
USP28-206ENST00000538224 PDE6BP35913 854 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 LONP1P36776 959 aaKnown RBP7.56□□□□□ -1.2
USP28-206ENST00000538224 PNOCQ13519 176 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 TXNRD1Q16881 649 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 LONRF3Q496Y0 759 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 FAM47AQ5JRC9 791 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 MFSD14BQ5SR56 506 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 RCSD1Q6JBY9 416 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 LRRC8AQ8IWT6 810 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 BLIDQ8IZY5 108 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 CMTR1Q8N1G2 835 aaKnown RBP7.56□□□□□ -1.2
USP28-206ENST00000538224 MYRIPQ8NFW9 859 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 NEDD1Q8NHV4 660 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 OXER1Q8TDS5 423 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 TGFBRAP1Q8WUH2 860 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 CLIC6Q96NY7 704 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 EYA3Q99504 573 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 GTPBP4Q9BZE4 634 aaKnown RBP7.56□□□□□ -1.2
USP28-206ENST00000538224 KCND1Q9NSA2 647 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 RMND1Q9NWS8 449 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 PYCARDQ9ULZ3 195 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 PCDHA4Q9UN74 947 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 ATP6V0A2Q9Y487 856 aa7.56□□□□□ -1.2
USP28-206ENST00000538224 CCDC194A0A1B0GVG4 234 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 UBE2Q2LH0YL09 131 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 C6orf229H3BNL8 230 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 BIN1O00499 593 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 PLSCR1O15162 318 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 ACTN4O43707 911 aaKnown RBP7.55□□□□□ -1.2
USP28-206ENST00000538224 SERPINC1P01008 464 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 MYL1P05976 194 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 SLFN14P0C7P3 912 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 TOP1P11387 765 aaKnown RBP7.55□□□□□ -1.2
USP28-206ENST00000538224 RASA1P20936 1047 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 SFPQP23246 707 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP28-206ENST00000538224 GTF2F1P35269 517 aaKnown RBP eCLIP7.55□□□□□ -1.2
USP28-206ENST00000538224 PLCD1P51178 756 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 FANCCQ00597 558 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 MDM2Q00987 491 aaPredicted RBP7.55□□□□□ -1.2
USP28-206ENST00000538224 DDR1Q08345 913 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 MORC3Q14149 939 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 NCAPHQ15003 741 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 DIXDC1Q155Q3 683 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 KRT25Q7Z3Z0 450 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 MAPKAPK5Q8IW41 473 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 IQUBQ8NA54 791 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 SPATA20Q8TB22 786 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 ENOX1Q8TC92 643 aaKnown RBP7.55□□□□□ -1.2
USP28-206ENST00000538224 GSDMAQ96QA5 445 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 XPO4Q9C0E2 1151 aaKnown RBP7.55□□□□□ -1.2
USP28-206ENST00000538224 CSRNP2Q9H175 543 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 MAGEF1Q9HAY2 307 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 IFNKQ9P0W0 207 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 SEC63Q9UGP8 760 aaKnown RBP7.55□□□□□ -1.2
USP28-206ENST00000538224 SWAP70Q9UH65 585 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 SERTAD1Q9UHV2 236 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 MAN1B1Q9UKM7 699 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 PAXBP1Q9Y5B6 917 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 PCDHA5Q9Y5H7 936 aa7.55□□□□□ -1.2
USP28-206ENST00000538224 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 ESYT2A0FGR8 921 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 PALM3A6NDB9 673 aaPredicted RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 RRP9O43818 475 aaKnown RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 NMT2O60551 498 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 TRIM37O94972 964 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 HLA-DOAP06340 250 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 PARP1P09874 1014 aaKnown RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 SKILP12757 684 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms