RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ELP1O95163 1332 aa11.38□□□□□ -0.59
USP28-205ENST00000537706 APAF1O14727 1248 aa11.38□□□□□ -0.59
USP28-205ENST00000537706 RRP1BQ14684 758 aaKnown RBP11.38□□□□□ -0.59
USP28-205ENST00000537706 PUS10Q3MIT2 529 aaKnown RBP11.38□□□□□ -0.59
USP28-205ENST00000537706 ATF7IPQ6VMQ6 1270 aa11.38□□□□□ -0.59
USP28-205ENST00000537706 FOXP4Q8IVH2 680 aaPredicted RBP11.38□□□□□ -0.59
USP28-205ENST00000537706 FAM178BQ8IXR5 827 aa11.38□□□□□ -0.59
USP28-205ENST00000537706 ABRAQ8N0Z2 381 aa11.38□□□□□ -0.59
USP28-205ENST00000537706 TSR2Q969E8 191 aaKnown RBP11.38□□□□□ -0.59
USP28-205ENST00000537706 SPC25Q9HBM1 224 aa11.38□□□□□ -0.59
USP28-205ENST00000537706 PRUNE2Q8WUY3 3088 aa11.38□□□□□ -0.59
USP28-205ENST00000537706 A0A0U1RQG5 324 aaPredicted RBP11.37□□□□□ -0.59
USP28-205ENST00000537706 ATP2A2P16615 1042 aaKnown RBP11.37□□□□□ -0.59
USP28-205ENST00000537706 OTOP2Q7RTS6 562 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 BICC1Q9H694 974 aaKnown RBP11.37□□□□□ -0.59
USP28-205ENST00000537706 CD320Q9NPF0 282 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 BTBD7Q9P203 1132 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 ZBTB21Q9ULJ3 1066 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 KIF28PB7ZC32 967 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 RHBDL3P58872 404 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 ZYXQ15942 572 aaKnown RBP11.37□□□□□ -0.59
USP28-205ENST00000537706 ATP2B3Q16720 1220 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 RABL6Q3YEC7 729 aaPredicted RBP11.37□□□□□ -0.59
USP28-205ENST00000537706 SLC4A10Q6U841 1118 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 ERMP1Q7Z2K6 904 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 TEX11Q8IYF3 940 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 PCSK9Q8NBP7 692 aaKnown RBP11.37□□□□□ -0.59
USP28-205ENST00000537706 MAML3Q96JK9 1138 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 MROH8Q9H579 483 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 CNPY2Q9Y2B0 182 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 EYSQ5T1H1 3165 aa11.37□□□□□ -0.59
USP28-205ENST00000537706 EYA2O00167 538 aa11.36□□□□□ -0.59
USP28-205ENST00000537706 RFXAPO00287 272 aa11.36□□□□□ -0.59
USP28-205ENST00000537706 GFRA3O60609 400 aa11.36□□□□□ -0.59
USP28-205ENST00000537706 COBLO75128 1261 aa11.36□□□□□ -0.59
USP28-205ENST00000537706 GDF11O95390 407 aa11.36□□□□□ -0.59
USP28-205ENST00000537706 SAMD1Q6SPF0 538 aaPredicted RBP11.36□□□□□ -0.59
USP28-205ENST00000537706 MOV10L1Q9BXT6 1211 aaKnown RBP11.36□□□□□ -0.59
USP28-205ENST00000537706 UPF3BQ9BZI7 483 aaKnown RBP11.36□□□□□ -0.59
USP28-205ENST00000537706 IRF2BPLQ9H1B7 796 aa11.36□□□□□ -0.59
USP28-205ENST00000537706 CEP126Q9P2H0 1117 aa11.36□□□□□ -0.59
USP28-205ENST00000537706 FAM50BQ9Y247 325 aa11.36□□□□□ -0.59
USP28-205ENST00000537706 ROBO3Q96MS0 1386 aa11.36□□□□□ -0.59
USP28-205ENST00000537706 ARVCFO00192 962 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 HLA-DOAP06340 250 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 FCER1AP12319 257 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 ERCC3P19447 782 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 LEXMQ3ZCV2 418 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 ARNTL2Q8WYA1 636 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 HOXC10Q9NYD6 342 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 LMCD1Q9NZU5 365 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 ZNF536O15090 1300 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 BDP1A6H8Y1 2624 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 SPDYE16A6NNV3 312 aaPredicted RBP11.35□□□□□ -0.59
USP28-205ENST00000537706 ZBTB22O15209 634 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 CA3P07451 260 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 MYOGP15173 224 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 CYP2C18P33260 490 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 KCNA10Q16322 511 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 PKN1Q16512 942 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 NCAPG2Q86XI2 1143 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 MB21D1Q8N884 522 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 SPATC1LQ9H0A9 340 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 HIPK3Q9H422 1215 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 CERS4Q9HA82 394 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 FAM184BQ9ULE4 1060 aa11.35□□□□□ -0.59
USP28-205ENST00000537706 PDS5AQ29RF7 1337 aaKnown RBP11.34□□□□□ -0.59
USP28-205ENST00000537706 ADAMTS4O75173 837 aa11.34□□□□□ -0.59
USP28-205ENST00000537706 ACTN1P12814 892 aa11.34□□□□□ -0.59
USP28-205ENST00000537706 PLCG2P16885 1265 aa11.34□□□□□ -0.59
USP28-205ENST00000537706 CDK7P50613 346 aa11.34□□□□□ -0.59
USP28-205ENST00000537706 MECOMQ03112 1051 aa11.34□□□□□ -0.59
USP28-205ENST00000537706 PLS1Q14651 629 aa11.34□□□□□ -0.59
USP28-205ENST00000537706 RPAP3Q9H6T3 665 aaPredicted RBP11.34□□□□□ -0.59
USP28-205ENST00000537706 UBE2ZQ9H832 354 aaPredicted RBP11.34□□□□□ -0.59
USP28-205ENST00000537706 MUC3AQ02505 3323 aa11.34□□□□□ -0.59
USP28-205ENST00000537706 BAG3O95817 575 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 PFKMP08237 780 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 VCAM1P19320 739 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 PHKA1P46020 1223 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 KLHDC4Q8TBB5 520 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 TINF2Q9BSI4 451 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 KIAA1683Q9H0B3 1180 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 ATAD5Q96QE3 1844 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 MYH13Q9UKX3 1938 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 ZNF236Q9UL36 1845 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 GRB10Q13322 594 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 COG2Q14746 738 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 PTCRAQ6ISU1 281 aaPredicted RBP11.33□□□□□ -0.6
USP28-205ENST00000537706 FAM126BQ8IXS8 530 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 KAZALD1Q96I82 304 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 SLC9A7Q96T83 725 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 SEZ6LQ9BYH1 1024 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 FBXO3Q9UK99 471 aa11.33□□□□□ -0.6
USP28-205ENST00000537706 DIS3Q9Y2L1 958 aaKnown RBP11.33□□□□□ -0.6
USP28-205ENST00000537706 GH2P01242 217 aa11.32□□□□□ -0.6
USP28-205ENST00000537706 CST5P28325 142 aaPredicted RBP11.32□□□□□ -0.6
USP28-205ENST00000537706 KRT40Q6A162 431 aa11.32□□□□□ -0.6
USP28-205ENST00000537706 HFE2Q6ZVN8 426 aa11.32□□□□□ -0.6
USP28-205ENST00000537706 ANKRD44Q8N8A2 993 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms