RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 GPCPD1Q9NPB8 672 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 LRWD1Q9UFC0 647 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 ANGEL1Q9UNK9 670 aaKnown RBP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 EXOC3O60645 756 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 TROVE2P10155 538 aaKnown RBP eCLIP11.78□□□□□ -0.52
CLIP1-209ENST00000537178 RPS6KB1P23443 525 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 TXKP42681 527 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 TTC38Q5R3I4 469 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 KLHL7Q8IXQ5 586 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 USP26Q9BXU7 913 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 RAB17Q9H0T7 212 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 PREX1Q8TCU6 1659 aa11.78□□□□□ -0.52
CLIP1-209ENST00000537178 NONOQ15233 471 aaKnown RBP eCLIP11.77□□□□□ -0.52
CLIP1-209ENST00000537178 NACA2Q9H009 215 aa11.77□□□□□ -0.52
CLIP1-209ENST00000537178 IBTKQ9P2D0 1353 aaPredicted RBP11.77□□□□□ -0.52
CLIP1-209ENST00000537178 RIOK3O14730 519 aaKnown RBP11.77□□□□□ -0.53
CLIP1-209ENST00000537178 HGSO14964 777 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-209ENST00000537178 POLR2DO15514 142 aaKnown RBP11.77□□□□□ -0.53
CLIP1-209ENST00000537178 BEND3Q5T5X7 828 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 SND1Q7KZF4 910 aaKnown RBP eCLIP11.77□□□□□ -0.53
CLIP1-209ENST00000537178 DNM3Q9UQ16 869 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 V9GY48 417 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-209ENST00000537178 ZFYVE9O95405 1425 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 B4E1Z4 1266 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 NOP56O00567 594 aaKnown RBP11.77□□□□□ -0.53
CLIP1-209ENST00000537178 POLD1P28340 1107 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 RPS6KA2Q15349 733 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 FAM71BQ8TC56 605 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 SNX29Q8TEQ0 813 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 NFE2L3Q9Y4A8 694 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 PTCH1Q13635 1447 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 CWF19L2Q2TBE0 894 aaKnown RBP11.77□□□□□ -0.53
CLIP1-209ENST00000537178 ZNF710Q8N1W2 664 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 CCDC89Q8N998 374 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 RILPQ96NA2 401 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 RBSNQ9H1K0 784 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 BIN2Q9UBW5 565 aaPredicted RBP11.77□□□□□ -0.53
CLIP1-209ENST00000537178 MAPK8IP1Q9UQF2 711 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 USTQ9Y2C2 406 aa11.77□□□□□ -0.53
CLIP1-209ENST00000537178 MAN1A1P33908 653 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 ZNF75DP51815 510 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 PPP2R5EQ16537 467 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 DENND2CQ68D51 928 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 PICK1Q9NRD5 415 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 CCNT1O60563 726 aaKnown RBP11.76□□□□□ -0.53
CLIP1-209ENST00000537178 IVNS1ABPQ9Y6Y0 642 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 RGPD1P0DJD0 1748 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 RIMBP2O15034 1052 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 PPFIA2O75334 1257 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 IL2RBP14784 551 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 PPP2R5CQ13362 524 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 HOMER3Q9NSC5 361 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 MAST3O60307 1309 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 YWHAEP62258 255 aaKnown RBP11.76□□□□□ -0.53
CLIP1-209ENST00000537178 SFMBT2Q5VUG0 894 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 VPS37BQ9H9H4 285 aa11.76□□□□□ -0.53
CLIP1-209ENST00000537178 MSH6P52701 1360 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 EYA2O00167 538 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 CYP2E1P05181 493 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-209ENST00000537178 STX2P32856 288 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 DNM2P50570 870 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 NLRP12P59046 1061 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 RBBP5Q15291 538 aaKnown RBP11.75□□□□□ -0.53
CLIP1-209ENST00000537178 APPBP2Q92624 585 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 HVCN1Q96D96 273 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 RIOK1Q9BRS2 568 aaKnown RBP11.75□□□□□ -0.53
CLIP1-209ENST00000537178 BAIAP2L1Q9UHR4 511 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 GINS2Q9Y248 185 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 VAMP4O75379 141 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 ELF2Q15723 593 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 DCAF5Q96JK2 942 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 LZTS2Q9BRK4 669 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 AZI2Q9H6S1 392 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 DDX21Q9NR30 783 aaKnown RBP eCLIP11.75□□□□□ -0.53
CLIP1-209ENST00000537178 MUM1L1Q5H9M0 696 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 TAB2Q9NYJ8 693 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 RGS16O15492 202 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-209ENST00000537178 ADCY7P51828 1080 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 ARHGAP4P98171 946 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 NCAPH2Q6IBW4 605 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 RSPH3Q86UC2 560 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 CTAGE3PQ8IX95 158 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 NFATC2IPQ8NCF5 419 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 HAUS8Q9BT25 410 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 TFCP2L1Q9NZI6 479 aa11.75□□□□□ -0.53
CLIP1-209ENST00000537178 ZNF202O95125 648 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 GBP5Q96PP8 586 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 IWS1Q96ST2 819 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 DDX41Q9UJV9 622 aaKnown RBP11.74□□□□□ -0.53
CLIP1-209ENST00000537178 MLH3Q9UHC1 1453 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 EIF4A2Q14240 407 aaKnown RBP11.74□□□□□ -0.53
CLIP1-209ENST00000537178 PARP10Q53GL7 1025 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 PPP4R1Q8TF05 950 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 HOOK2Q96ED9 719 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 CCDC51Q96ER9 411 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 RIC8AQ9NPQ8 531 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 KLHL14Q9P2G3 628 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 NRKQ7Z2Y5 1582 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 RGS12O14924 1447 aa11.74□□□□□ -0.53
CLIP1-209ENST00000537178 TBC1D8O95759 1140 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms