RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 PRR23CQ6ZRP0 262 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 SMYD4Q8IYR2 804 aaPredicted RBP6.61□□□□□ -1.35
CD44-236ENST00000533222 TBC1D22AQ8WUA7 517 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 EZH1Q92800 747 aaPredicted RBP6.61□□□□□ -1.35
CD44-236ENST00000533222 GPRASP2Q96D09 838 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 PPP1R9BQ96SB3 815 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 MTA3Q9BTC8 594 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 WNT10AQ9GZT5 417 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 GINM1Q9NU53 330 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 INPP5FQ9Y2H2 1132 aa6.61□□□□□ -1.35
CD44-236ENST00000533222 PRDM2Q13029 1718 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.6□□□□□ -1.35
CD44-236ENST00000533222 FANCGO15287 622 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 PGRP06401 933 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 FURINP09958 794 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 SETSIPP0DME0 302 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 XRCC6P12956 609 aaKnown RBP eCLIP6.6□□□□□ -1.35
CD44-236ENST00000533222 GJA8P48165 433 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 GSCP56915 257 aaPredicted RBP6.6□□□□□ -1.35
CD44-236ENST00000533222 CWF19L2Q2TBE0 894 aaKnown RBP6.6□□□□□ -1.35
CD44-236ENST00000533222 CT47A1Q5JQC4 288 aaPredicted RBP6.6□□□□□ -1.35
CD44-236ENST00000533222 SASS6Q6UVJ0 657 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 GK5Q6ZS86 529 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 SLITRK4Q8IW52 837 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 ANKRD13AQ8IZ07 590 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 NKD1Q969G9 470 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 DPH2Q9BQC3 489 aaPredicted RBP6.6□□□□□ -1.35
CD44-236ENST00000533222 RAXQ9Y2V3 346 aa6.6□□□□□ -1.35
CD44-236ENST00000533222 FAM95CA0A1B0GW59 222 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 HTR3BO95264 441 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 PLCG1P19174 1290 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 MCM4P33991 863 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 NOP2P46087 812 aaKnown RBP6.59□□□□□ -1.35
CD44-236ENST00000533222 TDO2P48775 406 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 GTF2A1P52655 376 aaPredicted RBP6.59□□□□□ -1.35
CD44-236ENST00000533222 CDK5R2Q13319 367 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 WDR78Q5VTH9 848 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 SEZ6L2Q6UXD5 910 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 CCDC81Q6ZN84 652 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 ACSF2Q96CM8 615 aaPredicted RBP6.59□□□□□ -1.35
CD44-236ENST00000533222 ANTXR1Q9H6X2 564 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 CGNQ9P2M7 1197 aaKnown RBP6.59□□□□□ -1.35
CD44-236ENST00000533222 REV1Q9UBZ9 1251 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 TJP2Q9UDY2 1190 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 PPT2Q9UMR5 302 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 SMC3Q9UQE7 1217 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 EFR3BQ9Y2G0 817 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 PCDHB14Q9Y5E9 798 aa6.59□□□□□ -1.35
CD44-236ENST00000533222 KANK1Q14678 1352 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 ADMP35318 185 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 MAGEA8P43361 318 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 KCNJ4P48050 445 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 CCDC173Q0VFZ6 552 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 SLBPQ14493 270 aaKnown RBP eCLIP6.58□□□□□ -1.36
CD44-236ENST00000533222 SYCP1Q15431 976 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 GORABQ5T7V8 394 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 KLHL10Q6JEL2 608 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 CCDC91Q7Z6B0 441 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.58□□□□□ -1.36
CD44-236ENST00000533222 FAM9BQ8IZU0 186 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 RASGRP4Q8TDF6 673 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 FAM83CQ9BQN1 747 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 SSU72Q9NP77 194 aaKnown RBP6.58□□□□□ -1.36
CD44-236ENST00000533222 C1GALT1Q9NS00 363 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 STOML1Q9UBI4 398 aa6.58□□□□□ -1.36
CD44-236ENST00000533222 ROBO2Q9HCK4 1378 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 PRR36Q9H6K5 1346 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 CCDC189A1A4V9 331 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 ANKRD18BA2A2Z9 1011 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 GOLGA6L6A8MZA4 724 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 UPK3BL1B0FP48 263 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 UPK3BL2E5RIL1 263 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 GOLGA6L22H0YM25 854 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 DYRK3O43781 588 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 SCP2P22307 547 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 NASPP49321 788 aaPredicted RBP6.57□□□□□ -1.36
CD44-236ENST00000533222 PSMC1P62191 440 aaKnown RBP6.57□□□□□ -1.36
CD44-236ENST00000533222 BECN1Q14457 450 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 NAALADL2Q58DX5 795 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 ARMCX6Q7L4S7 300 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 CLEC10AQ8IUN9 316 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 ZNF513Q8N8E2 541 aaPredicted RBP6.57□□□□□ -1.36
CD44-236ENST00000533222 ZNF507Q8TCN5 953 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 XAGE3Q8WTP9 111 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 GATA6Q92908 595 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 BORCS6Q96GS4 357 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 MFSD14AQ96MC6 490 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 YIPF2Q9BWQ6 316 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 TMX4Q9H1E5 349 aaPredicted RBP6.57□□□□□ -1.36
CD44-236ENST00000533222 RANBP17Q9H2T7 1088 aaKnown RBP6.57□□□□□ -1.36
CD44-236ENST00000533222 MAGEC2Q9UBF1 373 aaPredicted RBP6.57□□□□□ -1.36
CD44-236ENST00000533222 PRKAG2Q9UGJ0 569 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 KLHL3Q9UH77 587 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 NACADO15069 1562 aa6.57□□□□□ -1.36
CD44-236ENST00000533222 MPHOSPH10O00566 681 aaKnown RBP6.56□□□□□ -1.36
CD44-236ENST00000533222 LEFTY1O75610 366 aa6.56□□□□□ -1.36
CD44-236ENST00000533222 ITGB7P26010 798 aa6.56□□□□□ -1.36
CD44-236ENST00000533222 ZC3H6P61129 1189 aaKnown RBP6.56□□□□□ -1.36
CD44-236ENST00000533222 LRCH2Q5VUJ6 765 aa6.56□□□□□ -1.36
CD44-236ENST00000533222 PRAMEF13Q5VWM6 474 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms