RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 PUS7LQ9H0K6 701 aaKnown RBP20.25■□□□□ 0.83
CPSF1-207ENST00000531727 ARHGEF10LQ9HCE6 1279 aa20.25■□□□□ 0.83
CPSF1-207ENST00000531727 SLC4A4Q9Y6R1 1079 aa20.25■□□□□ 0.83
CPSF1-207ENST00000531727 RLFQ13129 1914 aa20.25■□□□□ 0.83
CPSF1-207ENST00000531727 SLC15A5A6NIM6 579 aa20.24■□□□□ 0.83
CPSF1-207ENST00000531727 SMIM22K7EJ46 135 aa20.24■□□□□ 0.83
CPSF1-207ENST00000531727 PTPREP23469 700 aa20.24■□□□□ 0.83
CPSF1-207ENST00000531727 CDK8P49336 464 aa20.24■□□□□ 0.83
CPSF1-207ENST00000531727 WDR78Q5VTH9 848 aa20.24■□□□□ 0.83
CPSF1-207ENST00000531727 C16orf86Q6ZW13 317 aa20.24■□□□□ 0.83
CPSF1-207ENST00000531727 SIAH1Q8IUQ4 282 aa20.24■□□□□ 0.83
CPSF1-207ENST00000531727 TANGO6Q9C0B7 1094 aa20.24■□□□□ 0.83
CPSF1-207ENST00000531727 NBPF3Q9H094 633 aa20.24■□□□□ 0.83
CPSF1-207ENST00000531727 HOXC10Q9NYD6 342 aa20.24■□□□□ 0.83
CPSF1-207ENST00000531727 RBM27Q9P2N5 1060 aaKnown RBP20.24■□□□□ 0.83
CPSF1-207ENST00000531727 MNX1P50219 401 aaPredicted RBP20.23■□□□□ 0.83
CPSF1-207ENST00000531727 ICA1Q05084 483 aa20.23■□□□□ 0.83
CPSF1-207ENST00000531727 KIAA1755Q5JYT7 1200 aa20.23■□□□□ 0.83
CPSF1-207ENST00000531727 CLEC10AQ8IUN9 316 aa20.23■□□□□ 0.83
CPSF1-207ENST00000531727 KBTBD3Q8NAB2 608 aa20.23■□□□□ 0.83
CPSF1-207ENST00000531727 LPAR1Q92633 364 aa20.23■□□□□ 0.83
CPSF1-207ENST00000531727 GPATCH3Q96I76 525 aa20.23■□□□□ 0.83
CPSF1-207ENST00000531727 PRO3102Q9H379 93 aa20.23■□□□□ 0.83
CPSF1-207ENST00000531727 SH2D4AQ9H788 454 aa20.23■□□□□ 0.83
CPSF1-207ENST00000531727 TMX2Q9Y320 296 aa20.23■□□□□ 0.83
CPSF1-207ENST00000531727 IVNS1ABPQ9Y6Y0 642 aa20.23■□□□□ 0.83
CPSF1-207ENST00000531727 CCND3P30281 292 aaPredicted RBP20.22■□□□□ 0.83
CPSF1-207ENST00000531727 GRB14Q14449 540 aa20.22■□□□□ 0.83
CPSF1-207ENST00000531727 CTR9Q6PD62 1173 aa20.22■□□□□ 0.83
CPSF1-207ENST00000531727 ARPP21Q9UBL0 812 aaPredicted RBP20.22■□□□□ 0.83
CPSF1-207ENST00000531727 ZNF236Q9UL36 1845 aa20.22■□□□□ 0.83
CPSF1-207ENST00000531727 PARP14Q460N5 1801 aa20.21■□□□□ 0.83
CPSF1-207ENST00000531727 FRMPD3Q5JV73 1810 aa20.21■□□□□ 0.83
CPSF1-207ENST00000531727 HOXC6P09630 235 aa20.21■□□□□ 0.83
CPSF1-207ENST00000531727 STRBPQ96SI9 672 aaKnown RBP20.21■□□□□ 0.83
CPSF1-207ENST00000531727 C11orf49Q9H6J7 331 aa20.21■□□□□ 0.83
CPSF1-207ENST00000531727 VCPKMTQ9H867 229 aa20.21■□□□□ 0.83
CPSF1-207ENST00000531727 FLRT1Q9NZU1 646 aa20.21■□□□□ 0.83
CPSF1-207ENST00000531727 CEP290O15078 2479 aa20.21■□□□□ 0.83
CPSF1-207ENST00000531727 DSG3P32926 999 aa20.2■□□□□ 0.82
CPSF1-207ENST00000531727 MFSD14CQ5VZR4 134 aa20.2■□□□□ 0.82
CPSF1-207ENST00000531727 LHX8Q68G74 356 aa20.2■□□□□ 0.82
CPSF1-207ENST00000531727 MB21D1Q8N884 522 aa20.2■□□□□ 0.82
CPSF1-207ENST00000531727 MOV10L1Q9BXT6 1211 aaKnown RBP20.2■□□□□ 0.82
CPSF1-207ENST00000531727 SPATC1LQ9H0A9 340 aa20.2■□□□□ 0.82
CPSF1-207ENST00000531727 WDR46O15213 610 aaKnown RBP20.19■□□□□ 0.82
CPSF1-207ENST00000531727 FLOT1O75955 427 aa20.19■□□□□ 0.82
CPSF1-207ENST00000531727 TSHZ3Q63HK5 1081 aa20.19■□□□□ 0.82
CPSF1-207ENST00000531727 SPICE1Q8N0Z3 855 aa20.19■□□□□ 0.82
CPSF1-207ENST00000531727 SHCBP1Q8NEM2 672 aa20.19■□□□□ 0.82
CPSF1-207ENST00000531727 NPLOC4Q8TAT6 608 aa20.19■□□□□ 0.82
CPSF1-207ENST00000531727 APPBP2Q92624 585 aa20.19■□□□□ 0.82
CPSF1-207ENST00000531727 KANSL2Q9H9L4 492 aa20.19■□□□□ 0.82
CPSF1-207ENST00000531727 GREB1LQ9C091 1923 aaPredicted RBP20.18■□□□□ 0.82
CPSF1-207ENST00000531727 GSG1L2A8MUP6 293 aa20.18■□□□□ 0.82
CPSF1-207ENST00000531727 RNF113AO15541 343 aaKnown RBP20.18■□□□□ 0.82
CPSF1-207ENST00000531727 STRNO43815 780 aa20.18■□□□□ 0.82
CPSF1-207ENST00000531727 EEF2P13639 858 aaKnown RBP20.18■□□□□ 0.82
CPSF1-207ENST00000531727 ATP2B2Q01814 1243 aa20.18■□□□□ 0.82
CPSF1-207ENST00000531727 SBK1Q52WX2 424 aa20.18■□□□□ 0.82
CPSF1-207ENST00000531727 GIMAP6Q6P9H5 292 aa20.18■□□□□ 0.82
CPSF1-207ENST00000531727 C7orf61Q8IZ16 206 aa20.18■□□□□ 0.82
CPSF1-207ENST00000531727 OSBP2Q969R2 916 aa20.18■□□□□ 0.82
CPSF1-207ENST00000531727 ZFYP08048 801 aaPredicted RBP20.17■□□□□ 0.82
CPSF1-207ENST00000531727 ERCC3P19447 782 aa20.17■□□□□ 0.82
CPSF1-207ENST00000531727 ATG4CQ96DT6 458 aa20.17■□□□□ 0.82
CPSF1-207ENST00000531727 PCDHB15Q9Y5E8 787 aa20.17■□□□□ 0.82
CPSF1-207ENST00000531727 PFASO15067 1338 aa20.17■□□□□ 0.82
CPSF1-207ENST00000531727 A0A1W2PPC1 479 aa20.16■□□□□ 0.82
CPSF1-207ENST00000531727 COL6A1P12109 1028 aa20.16■□□□□ 0.82
CPSF1-207ENST00000531727 ADORA2AP29274 412 aa20.16■□□□□ 0.82
CPSF1-207ENST00000531727 PLS1Q14651 629 aa20.16■□□□□ 0.82
CPSF1-207ENST00000531727 DPP9Q86TI2 863 aa20.16■□□□□ 0.82
CPSF1-207ENST00000531727 MROH8Q9H579 483 aa20.16■□□□□ 0.82
CPSF1-207ENST00000531727 TTC41PQ6P2S7 1318 aa20.16■□□□□ 0.82
CPSF1-207ENST00000531727 ROBO3Q96MS0 1386 aa20.16■□□□□ 0.82
CPSF1-207ENST00000531727 GPAA1O43292 621 aa20.15■□□□□ 0.82
CPSF1-207ENST00000531727 IGHA2P01877 340 aa20.15■□□□□ 0.82
CPSF1-207ENST00000531727 CYP2C19P33261 490 aa20.15■□□□□ 0.82
CPSF1-207ENST00000531727 OLFML2BQ68BL8 750 aa20.15■□□□□ 0.82
CPSF1-207ENST00000531727 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.15■□□□□ 0.82
CPSF1-207ENST00000531727 GOPCQ9HD26 462 aa20.15■□□□□ 0.82
CPSF1-207ENST00000531727 STAP2Q9UGK3 403 aa20.15■□□□□ 0.82
CPSF1-207ENST00000531727 DDX20Q9UHI6 824 aaKnown RBP20.15■□□□□ 0.82
CPSF1-207ENST00000531727 COL11A1P12107 1806 aaPredicted RBP20.15■□□□□ 0.82
CPSF1-207ENST00000531727 MINDY4BA8MYZ0 360 aa20.14■□□□□ 0.81
CPSF1-207ENST00000531727 MSCO60682 206 aa20.14■□□□□ 0.81
CPSF1-207ENST00000531727 GNAT2P19087 354 aa20.14■□□□□ 0.81
CPSF1-207ENST00000531727 LRRFIP1Q32MZ4 808 aaKnown RBP20.14■□□□□ 0.81
CPSF1-207ENST00000531727 SAMD1Q6SPF0 538 aaPredicted RBP20.14■□□□□ 0.81
CPSF1-207ENST00000531727 NCAPG2Q86XI2 1143 aa20.14■□□□□ 0.81
CPSF1-207ENST00000531727 ABRAQ8N0Z2 381 aa20.14■□□□□ 0.81
CPSF1-207ENST00000531727 MKNK2Q9HBH9 465 aa20.14■□□□□ 0.81
CPSF1-207ENST00000531727 EPB41L4AQ9HCS5 686 aaPredicted RBP20.14■□□□□ 0.81
CPSF1-207ENST00000531727 ZMYND8Q9ULU4 1186 aaPredicted RBP20.14■□□□□ 0.81
CPSF1-207ENST00000531727 ADAMTS5Q9UNA0 930 aa20.14■□□□□ 0.81
CPSF1-207ENST00000531727 RANBP2P49792 3224 aaKnown RBP20.14■□□□□ 0.81
CPSF1-207ENST00000531727 TRIOBPQ9H2D6 2365 aa20.13■□□□□ 0.81
CPSF1-207ENST00000531727 M0R2C6 588 aa20.13■□□□□ 0.81
CPSF1-207ENST00000531727 ERC2O15083 957 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms