RNA–Protein interactions for RNA: ENST00000531430.5

NEDD8-206, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 651 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-206ENST00000531430 MCM9Q9NXL9 1143 aa11.23□□□□□ -0.61
NEDD8-206ENST00000531430 TLR7Q9NYK1 1049 aaKnown RBP11.23□□□□□ -0.61
NEDD8-206ENST00000531430 DBNLQ9UJU6 430 aaKnown RBP11.23□□□□□ -0.61
NEDD8-206ENST00000531430 LAMA2P24043 3122 aaKnown RBP11.22□□□□□ -0.61
NEDD8-206ENST00000531430 MAGEB6P1A0A0J9YX57 407 aa11.22□□□□□ -0.61
NEDD8-206ENST00000531430 TRIM43BA6NCK2 446 aa11.22□□□□□ -0.61
NEDD8-206ENST00000531430 SEPT4O43236 478 aa11.22□□□□□ -0.61
NEDD8-206ENST00000531430 COBLO75128 1261 aa11.22□□□□□ -0.61
NEDD8-206ENST00000531430 CYBAP13498 195 aa11.22□□□□□ -0.61
NEDD8-206ENST00000531430 RAG1P15918 1043 aa11.22□□□□□ -0.61
NEDD8-206ENST00000531430 SHMT1P34896 483 aa11.22□□□□□ -0.61
NEDD8-206ENST00000531430 SLC4A3P48751 1232 aa11.22□□□□□ -0.61
NEDD8-206ENST00000531430 SPICE1Q8N0Z3 855 aa11.22□□□□□ -0.61
NEDD8-206ENST00000531430 TRIM43Q96BQ3 446 aaPredicted RBP11.22□□□□□ -0.61
NEDD8-206ENST00000531430 EAF2Q96CJ1 260 aaPredicted RBP11.22□□□□□ -0.61
NEDD8-206ENST00000531430 SIPA1L1O43166 1804 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 A0A1W2PRG0 241 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 PQBP1O60828 265 aaKnown RBP11.21□□□□□ -0.61
NEDD8-206ENST00000531430 FLOT1O75955 427 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 FCER1AP12319 257 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 GUCY1A2P33402 732 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 POLA2Q14181 598 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 LRRC41Q15345 812 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 OLFML2BQ68BL8 750 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 LBX2Q6XYB7 198 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 CERS3Q8IU89 383 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 ZNF512BQ96KM6 892 aaPredicted RBP11.21□□□□□ -0.61
NEDD8-206ENST00000531430 RNPC3Q96LT9 517 aaKnown RBP11.21□□□□□ -0.61
NEDD8-206ENST00000531430 EHD4Q9H223 541 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 TTYH1Q9H313 450 aaPredicted RBP11.21□□□□□ -0.61
NEDD8-206ENST00000531430 TMEM39AQ9NV64 488 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 TACC3Q9Y6A5 838 aa11.21□□□□□ -0.61
NEDD8-206ENST00000531430 MYH1P12882 1939 aa11.21□□□□□ -0.62
NEDD8-206ENST00000531430 APBB1O00213 710 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 PGK1P00558 417 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 RARBP10826 455 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 DSG3P32926 999 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 SMAD3P84022 425 aaKnown RBP11.2□□□□□ -0.62
NEDD8-206ENST00000531430 EVX2Q03828 476 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 FAM47AQ5JRC9 791 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 ZKSCAN2Q63HK3 967 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 RNF180Q86T96 592 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 AACSQ86V21 672 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 SSH3Q8TE77 659 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 SYMPKQ92797 1274 aaKnown RBP11.2□□□□□ -0.62
NEDD8-206ENST00000531430 VTI1AQ96AJ9 217 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 ATG4CQ96DT6 458 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 CRNKL1Q9BZJ0 848 aaKnown RBP11.2□□□□□ -0.62
NEDD8-206ENST00000531430 MROH8Q9H579 483 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 XPNPEP3Q9NQH7 507 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 PDLIM7Q9NR12 457 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 CDK5RAP2Q96SN8 1893 aa11.2□□□□□ -0.62
NEDD8-206ENST00000531430 MYO5AQ9Y4I1 1855 aaKnown RBP11.2□□□□□ -0.62
NEDD8-206ENST00000531430 PGK2P07205 417 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 CLTBP09497 229 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 CYP2D6P10635 497 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 KIAA1755Q5JYT7 1200 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 SLC9C2Q5TAH2 1124 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 ITPRIPQ8IWB1 547 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 FTSJ3Q8IY81 847 aaKnown RBP11.19□□□□□ -0.62
NEDD8-206ENST00000531430 SDR42E1Q8WUS8 393 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 DYNLL2Q96FJ2 89 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 MAML3Q96JK9 1138 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 MMP19Q99542 508 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 ARHGEF10LQ9HCE6 1279 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 IL1RAPL2Q9NP60 686 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 PRDM6Q9NQX0 595 aa11.19□□□□□ -0.62
NEDD8-206ENST00000531430 IGSF3O75054 1194 aa11.18□□□□□ -0.62
NEDD8-206ENST00000531430 ITGB8P26012 769 aa11.18□□□□□ -0.62
NEDD8-206ENST00000531430 EPHB4P54760 987 aa11.18□□□□□ -0.62
NEDD8-206ENST00000531430 KCTD2Q14681 263 aa11.18□□□□□ -0.62
NEDD8-206ENST00000531430 GRIN2CQ14957 1233 aa11.18□□□□□ -0.62
NEDD8-206ENST00000531430 CCDC129Q6ZRS4 1044 aa11.18□□□□□ -0.62
NEDD8-206ENST00000531430 CLEC10AQ8IUN9 316 aa11.18□□□□□ -0.62
NEDD8-206ENST00000531430 SLC44A5Q8NCS7 719 aa11.18□□□□□ -0.62
NEDD8-206ENST00000531430 SHCBP1Q8NEM2 672 aa11.18□□□□□ -0.62
NEDD8-206ENST00000531430 DNAJC2Q99543 621 aaKnown RBP11.18□□□□□ -0.62
NEDD8-206ENST00000531430 EXOC6BQ9Y2D4 811 aa11.18□□□□□ -0.62
NEDD8-206ENST00000531430 ZNF532Q9HCE3 1301 aa11.17□□□□□ -0.62
NEDD8-206ENST00000531430 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.17□□□□□ -0.62
NEDD8-206ENST00000531430 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.17□□□□□ -0.62
NEDD8-206ENST00000531430 DCDC2CA8MYV0 355 aa11.17□□□□□ -0.62
NEDD8-206ENST00000531430 AKR1B1P15121 316 aa11.17□□□□□ -0.62
NEDD8-206ENST00000531430 TAL1P17542 331 aaPredicted RBP11.17□□□□□ -0.62
NEDD8-206ENST00000531430 FPGSQ05932 587 aa11.17□□□□□ -0.62
NEDD8-206ENST00000531430 TTF1Q15361 905 aaPredicted RBP11.17□□□□□ -0.62
NEDD8-206ENST00000531430 TMEM179Q6ZVK1 233 aa11.17□□□□□ -0.62
NEDD8-206ENST00000531430 MB21D1Q8N884 522 aa11.17□□□□□ -0.62
NEDD8-206ENST00000531430 RIOK1Q9BRS2 568 aaKnown RBP11.17□□□□□ -0.62
NEDD8-206ENST00000531430 SH2D4AQ9H788 454 aa11.17□□□□□ -0.62
NEDD8-206ENST00000531430 ARMT1Q9H993 441 aa11.17□□□□□ -0.62
NEDD8-206ENST00000531430 NOP58Q9Y2X3 529 aaKnown RBP11.17□□□□□ -0.62
NEDD8-206ENST00000531430 SMCHD1A6NHR9 2005 aa11.17□□□□□ -0.62
NEDD8-206ENST00000531430 GOLIM4O00461 696 aa11.16□□□□□ -0.62
NEDD8-206ENST00000531430 SLC25A27O95847 323 aa11.16□□□□□ -0.62
NEDD8-206ENST00000531430 PDE6AP16499 860 aa11.16□□□□□ -0.62
NEDD8-206ENST00000531430 STAT3P40763 770 aa11.16□□□□□ -0.62
NEDD8-206ENST00000531430 ICA1Q05084 483 aa11.16□□□□□ -0.62
NEDD8-206ENST00000531430 GABPAQ06546 454 aa11.16□□□□□ -0.62
NEDD8-206ENST00000531430 TMEM132BQ14DG7 1078 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms