RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 VPS37CA5D8V6 355 aaPredicted RBP24.66■■□□□ 1.54
VPS28-212ENST00000530836 TBC1D12O60347 775 aa24.66■■□□□ 1.54
VPS28-212ENST00000530836 ADD1P35611 737 aaKnown RBP24.66■■□□□ 1.54
VPS28-212ENST00000530836 PPP4R3BQ5MIZ7 849 aa24.66■■□□□ 1.54
VPS28-212ENST00000530836 LDLRAD1Q5T700 205 aa24.66■■□□□ 1.54
VPS28-212ENST00000530836 KLRG1Q96E93 195 aa24.66■■□□□ 1.54
VPS28-212ENST00000530836 CCDC17Q96LX7 622 aa24.66■■□□□ 1.54
VPS28-212ENST00000530836 ZNF341Q9BYN7 854 aa24.66■■□□□ 1.54
VPS28-212ENST00000530836 FAM217BQ9NTX9 383 aaPredicted RBP24.66■■□□□ 1.54
VPS28-212ENST00000530836 STK36Q9NRP7 1315 aa24.66■■□□□ 1.54
VPS28-212ENST00000530836 H3BQV1 296 aa24.65■■□□□ 1.54
VPS28-212ENST00000530836 IFNAR1P17181 557 aa24.65■■□□□ 1.54
VPS28-212ENST00000530836 CDC27P30260 824 aa24.65■■□□□ 1.54
VPS28-212ENST00000530836 IFFO2Q5TF58 517 aa24.65■■□□□ 1.54
VPS28-212ENST00000530836 METTL16Q86W50 562 aaKnown RBP24.65■■□□□ 1.54
VPS28-212ENST00000530836 HHIPL1Q96JK4 782 aa24.65■■□□□ 1.54
VPS28-212ENST00000530836 KAT14Q9H8E8 782 aa24.65■■□□□ 1.54
VPS28-212ENST00000530836 IL17RBQ9NRM6 502 aa24.65■■□□□ 1.54
VPS28-212ENST00000530836 ORC3Q9UBD5 711 aaPredicted RBP24.65■■□□□ 1.54
VPS28-212ENST00000530836 UNCXA6NJT0 531 aa24.64■■□□□ 1.54
VPS28-212ENST00000530836 TROAPQ12815 778 aa24.64■■□□□ 1.54
VPS28-212ENST00000530836 NTRK3Q16288 839 aa24.64■■□□□ 1.54
VPS28-212ENST00000530836 RCSD1Q6JBY9 416 aa24.64■■□□□ 1.54
VPS28-212ENST00000530836 RAB11FIP4Q86YS3 637 aa24.64■■□□□ 1.54
VPS28-212ENST00000530836 NUP133Q8WUM0 1156 aa24.64■■□□□ 1.54
VPS28-212ENST00000530836 WASF1Q92558 559 aa24.64■■□□□ 1.54
VPS28-212ENST00000530836 MYL10Q9BUA6 226 aa24.64■■□□□ 1.54
VPS28-212ENST00000530836 RASSF10A6NK89 507 aa24.64■■□□□ 1.53
VPS28-212ENST00000530836 SLURP2P0DP57 97 aa24.64■■□□□ 1.53
VPS28-212ENST00000530836 FDPSP14324 419 aaKnown RBP24.64■■□□□ 1.53
VPS28-212ENST00000530836 RXRAP19793 462 aa24.64■■□□□ 1.53
VPS28-212ENST00000530836 CRACR2BQ8N4Y2 399 aaPredicted RBP24.64■■□□□ 1.53
VPS28-212ENST00000530836 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.64■■□□□ 1.537e-9■□□□□ 10.3
VPS28-212ENST00000530836 TRIM34Q9BYJ4 488 aa24.64■■□□□ 1.53
VPS28-212ENST00000530836 HERC5Q9UII4 1024 aaKnown RBP24.64■■□□□ 1.53
VPS28-212ENST00000530836 ZNF112Q9UJU3 913 aa24.64■■□□□ 1.53
VPS28-212ENST00000530836 PAPPA2Q9BXP8 1791 aa24.63■■□□□ 1.53
VPS28-212ENST00000530836 NMT2O60551 498 aa24.63■■□□□ 1.53
VPS28-212ENST00000530836 MAP3K9P80192 1104 aa24.63■■□□□ 1.53
VPS28-212ENST00000530836 SSRP1Q08945 709 aaKnown RBP24.63■■□□□ 1.53
VPS28-212ENST00000530836 DEFB115Q30KQ5 88 aa24.63■■□□□ 1.53
VPS28-212ENST00000530836 FOXD4L5Q5VV16 416 aaPredicted RBP24.63■■□□□ 1.53
VPS28-212ENST00000530836 CCDC144CPQ8IYA2 1237 aa24.63■■□□□ 1.53
VPS28-212ENST00000530836 TRIM22Q8IYM9 498 aa24.63■■□□□ 1.53
VPS28-212ENST00000530836 CTCFLQ8NI51 663 aaPredicted RBP24.63■■□□□ 1.53
VPS28-212ENST00000530836 FOXD4L4Q8WXT5 416 aaPredicted RBP24.63■■□□□ 1.53
VPS28-212ENST00000530836 ZSCAN16Q9H4T2 348 aaPredicted RBP24.63■■□□□ 1.53
VPS28-212ENST00000530836 PHF20L1A8MW92 1017 aa24.62■■□□□ 1.53
VPS28-212ENST00000530836 KIF5BP33176 963 aa24.62■■□□□ 1.53
VPS28-212ENST00000530836 NOVP48745 357 aa24.62■■□□□ 1.53
VPS28-212ENST00000530836 ANKRD13AQ8IZ07 590 aa24.62■■□□□ 1.53
VPS28-212ENST00000530836 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.62■■□□□ 1.53
VPS28-212ENST00000530836 WRNIP1Q96S55 665 aa24.61■■□□□ 1.53
VPS28-212ENST00000530836 FMNL1O95466 1100 aaPredicted RBP24.61■■□□□ 1.53
VPS28-212ENST00000530836 SHMT1P34896 483 aa24.61■■□□□ 1.53
VPS28-212ENST00000530836 RGMBQ6NW40 437 aa24.61■■□□□ 1.53
VPS28-212ENST00000530836 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.61■■□□□ 1.53
VPS28-212ENST00000530836 PNMA1Q8ND90 353 aa24.61■■□□□ 1.53
VPS28-212ENST00000530836 FAM196BA6NMK8 535 aa24.6■■□□□ 1.53
VPS28-212ENST00000530836 C8orf76Q96K31 380 aa24.6■■□□□ 1.53
VPS28-212ENST00000530836 STX8Q9UNK0 236 aa24.6■■□□□ 1.53
VPS28-212ENST00000530836 DTNBO60941 627 aa24.59■■□□□ 1.53
VPS28-212ENST00000530836 TOP1P11387 765 aaKnown RBP24.59■■□□□ 1.53
VPS28-212ENST00000530836 GNAQP50148 359 aa24.59■■□□□ 1.53
VPS28-212ENST00000530836 MCTP1Q6DN14 999 aa24.59■■□□□ 1.53
VPS28-212ENST00000530836 CLMNQ96JQ2 1002 aa24.59■■□□□ 1.53
VPS28-212ENST00000530836 RNF26Q9BY78 433 aaPredicted RBP24.59■■□□□ 1.53
VPS28-212ENST00000530836 DNAJC18Q9H819 358 aa24.59■■□□□ 1.53
VPS28-212ENST00000530836 INPP5BP32019 993 aa24.58■■□□□ 1.53
VPS28-212ENST00000530836 ZNF157P51786 506 aaPredicted RBP24.58■■□□□ 1.53
VPS28-212ENST00000530836 TATDN1Q6P1N9 297 aa24.58■■□□□ 1.53
VPS28-212ENST00000530836 ZKSCAN4Q969J2 545 aaPredicted RBP24.58■■□□□ 1.53
VPS28-212ENST00000530836 SLC10A4Q96EP9 437 aa24.58■■□□□ 1.53
VPS28-212ENST00000530836 TMEM47Q9BQJ4 181 aa24.58■■□□□ 1.53
VPS28-212ENST00000530836 CSADQ9Y600 493 aa24.58■■□□□ 1.53
VPS28-212ENST00000530836 IGKV6D-41A0A0C4DH26 115 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 DEXIO95424 95 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 VGLL4Q14135 290 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 SKOR2Q2VWA4 1001 aaPredicted RBP24.57■■□□□ 1.52
VPS28-212ENST00000530836 FBXO18Q8NFZ0 1043 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 CEP95Q96GE4 821 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 SLC26A6Q9BXS9 759 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 MTMR4Q9NYA4 1195 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 CTNND1O60716 968 aaKnown RBP24.57■■□□□ 1.52
VPS28-212ENST00000530836 AKAP17AQ02040 695 aaKnown RBP24.57■■□□□ 1.52
VPS28-212ENST00000530836 CSPP1Q1MSJ5 1256 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 CYP4F22Q6NT55 531 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 TMTC3Q6ZXV5 915 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 NBPF11Q86T75 865 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 DNAJC5GQ8N7S2 189 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 PHKBQ93100 1093 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 CCDC102AQ96A19 550 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 ALG1Q9BT22 464 aa24.57■■□□□ 1.52
VPS28-212ENST00000530836 RBM27Q9P2N5 1060 aaKnown RBP24.57■■□□□ 1.52
VPS28-212ENST00000530836 MYH8P13535 1937 aa24.56■■□□□ 1.52
VPS28-212ENST00000530836 CEP350Q5VT06 3117 aa24.56■■□□□ 1.52
VPS28-212ENST00000530836 AKR1B1P15121 316 aa24.56■■□□□ 1.52
VPS28-212ENST00000530836 TRIM29Q14134 588 aa24.56■■□□□ 1.52
VPS28-212ENST00000530836 CERKLQ49MI3 558 aaPredicted RBP24.56■■□□□ 1.52
VPS28-212ENST00000530836 NOL9Q5SY16 702 aaKnown RBP24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms