RNA–Protein interactions for RNA: ENST00000530442.5

CAPN1-218, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-218ENST00000530442 VCPKMTQ9H867 229 aa12.94□□□□□ -0.34
CAPN1-218ENST00000530442 ZCCHC17Q9NP64 241 aaKnown RBP12.94□□□□□ -0.34
CAPN1-218ENST00000530442 TMOD4Q9NZQ9 345 aa12.94□□□□□ -0.34
CAPN1-218ENST00000530442 CLIP2Q9UDT6 1046 aa12.94□□□□□ -0.34
CAPN1-218ENST00000530442 SNX14Q9Y5W7 946 aa12.94□□□□□ -0.34
CAPN1-218ENST00000530442 COL11A1P12107 1806 aaPredicted RBP12.94□□□□□ -0.34
CAPN1-218ENST00000530442 ZSWIM8A7E2V4 1837 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 PDHXO00330 501 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 ZKSCAN1P17029 563 aaPredicted RBP12.93□□□□□ -0.34
CAPN1-218ENST00000530442 PPP4R3BQ5MIZ7 849 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 RASGRP2Q7LDG7 609 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 CHST3Q7LGC8 479 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 IQCA1Q86XH1 822 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 SPICE1Q8N0Z3 855 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 ENAHQ8N8S7 591 aaPredicted RBP12.93□□□□□ -0.34
CAPN1-218ENST00000530442 ZSCAN10Q96SZ4 725 aaPredicted RBP12.93□□□□□ -0.34
CAPN1-218ENST00000530442 RNF186Q9NXI6 227 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 SAGE1Q9NXZ1 904 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 SYNPO2Q9UMS6 1093 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 SLC45A1Q9Y2W3 748 aa12.93□□□□□ -0.34
CAPN1-218ENST00000530442 ADGRA2Q96PE1 1338 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 NDUFB10O96000 172 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 ALDH1A1P00352 501 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 HSPA1AP0DMV8 641 aaKnown RBP12.92□□□□□ -0.34
CAPN1-218ENST00000530442 HSPA1BP0DMV9 641 aaKnown RBP12.92□□□□□ -0.34
CAPN1-218ENST00000530442 SEC23AQ15436 765 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 TAF1CQ15572 869 aaPredicted RBP12.92□□□□□ -0.34
CAPN1-218ENST00000530442 OTUD7BQ6GQQ9 843 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 GMCL1P1Q8NEA9 526 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 LPAR1Q92633 364 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 TMEM47Q9BQJ4 181 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 UBAC1Q9BSL1 405 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 CFHR5Q9BXR6 569 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 RPAP3Q9H6T3 665 aaPredicted RBP12.92□□□□□ -0.34
CAPN1-218ENST00000530442 GOPCQ9HD26 462 aa12.92□□□□□ -0.34
CAPN1-218ENST00000530442 F5H6K3 240 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 WDR46O15213 610 aaKnown RBP12.91□□□□□ -0.34
CAPN1-218ENST00000530442 PRC1O43663 620 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 RAD21O60216 631 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 TRPA1O75762 1119 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 CYP2C8P10632 490 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 TOP1P11387 765 aaKnown RBP12.91□□□□□ -0.34
CAPN1-218ENST00000530442 MCCP23508 829 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 HOXA7P31268 230 aaPredicted RBP12.91□□□□□ -0.34
CAPN1-218ENST00000530442 KLRC3Q07444 240 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 CRHR2Q13324 411 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 KRT32Q14532 448 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 DGKHQ86XP1 1220 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 NEK1Q96PY6 1258 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 PARK7Q99497 189 aaKnown RBP12.91□□□□□ -0.34
CAPN1-218ENST00000530442 R3HDMLQ9H3Y0 253 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 SENP2Q9HC62 589 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 TSKSQ9UJT2 592 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 MGAMO43451 1857 aa12.91□□□□□ -0.34
CAPN1-218ENST00000530442 SH2B2O14492 632 aaPredicted RBP12.9□□□□□ -0.34
CAPN1-218ENST00000530442 FOXN1O15353 648 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 CA12O43570 354 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 EIF5BO60841 1220 aaKnown RBP12.9□□□□□ -0.34
CAPN1-218ENST00000530442 TBC1D8O95759 1140 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 MCM5P33992 734 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 PABPC4Q13310 644 aaKnown RBP eCLIP12.9□□□□□ -0.34
CAPN1-218ENST00000530442 CCDC178Q5BJE1 867 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 FAM83BQ5T0W9 1011 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 ANKS1AQ92625 1134 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 TCEANC2Q96MN5 208 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 JAKMIP1Q96N16 626 aaKnown RBP12.9□□□□□ -0.34
CAPN1-218ENST00000530442 TTC14Q96N46 770 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 NUP88Q99567 741 aaPredicted RBP12.9□□□□□ -0.34
CAPN1-218ENST00000530442 BEGAINQ9BUH8 593 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 LRRC2Q9BYS8 371 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 ASCC2Q9H1I8 757 aaPredicted RBP12.9□□□□□ -0.34
CAPN1-218ENST00000530442 GPHNQ9NQX3 736 aaPredicted RBP12.9□□□□□ -0.34
CAPN1-218ENST00000530442 PNMA3Q9UL41 463 aa12.9□□□□□ -0.34
CAPN1-218ENST00000530442 WDR19Q8NEZ3 1342 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 USP17L15C9J2P7 530 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 USP17L13C9JLJ4 530 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 USP17L11C9JVI0 530 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 USP17L18D6R9N7 530 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 USP17L22D6RA61 530 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 USP17L17D6RBQ6 530 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 USP17L19D6RCP7 530 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 USP17L20D6RJB6 530 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 IFIT3O14879 490 aaKnown RBP12.89□□□□□ -0.35
CAPN1-218ENST00000530442 CPA1P15085 419 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 IRX3P78415 501 aaPredicted RBP12.89□□□□□ -0.35
CAPN1-218ENST00000530442 USP17L24Q0WX57 530 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 WTAPQ15007 396 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 IFIT1BQ5T764 474 aaKnown RBP12.89□□□□□ -0.35
CAPN1-218ENST00000530442 SLFN13Q68D06 897 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 CATSPERGQ6ZRH7 1159 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 PNMA1Q8ND90 353 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 IGDCC4Q8TDY8 1250 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 CHMP4CQ96CF2 233 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 GMCL1Q96IK5 515 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 MTA3Q9BTC8 594 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 TANGO6Q9C0B7 1094 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 KAT14Q9H8E8 782 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 LY9Q9HBG7 655 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 ZFYVE28Q9HCC9 887 aa12.89□□□□□ -0.35
CAPN1-218ENST00000530442 ERICH2A1L162 156 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms