RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 STRNO43815 780 aa12.8□□□□□ -0.36
CPSF1-203ENST00000527916 GH2P01242 217 aa12.8□□□□□ -0.36
CPSF1-203ENST00000527916 CYP2E1P05181 493 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-203ENST00000527916 ADCYAP1R1P41586 468 aa12.8□□□□□ -0.36
CPSF1-203ENST00000527916 PPP4CP60510 307 aa12.8□□□□□ -0.36
CPSF1-203ENST00000527916 ZYXQ15942 572 aaKnown RBP12.8□□□□□ -0.36
CPSF1-203ENST00000527916 SHROOM1Q2M3G4 852 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-203ENST00000527916 TMED8Q6PL24 325 aaPredicted RBP12.8□□□□□ -0.36
CPSF1-203ENST00000527916 CATSPERGQ6ZRH7 1159 aa12.8□□□□□ -0.36
CPSF1-203ENST00000527916 NPLOC4Q8TAT6 608 aa12.8□□□□□ -0.36
CPSF1-203ENST00000527916 DBNLQ9UJU6 430 aaKnown RBP12.8□□□□□ -0.36
CPSF1-203ENST00000527916 TRIM43BA6NCK2 446 aa12.79□□□□□ -0.36
CPSF1-203ENST00000527916 TLE2Q04725 743 aa12.79□□□□□ -0.36
CPSF1-203ENST00000527916 GRIN2CQ14957 1233 aa12.79□□□□□ -0.36
CPSF1-203ENST00000527916 SH3RF1Q7Z6J0 888 aa12.79□□□□□ -0.36
CPSF1-203ENST00000527916 ATXN2LQ8WWM7 1075 aaKnown RBP12.79□□□□□ -0.36
CPSF1-203ENST00000527916 FERMT2Q96AC1 680 aa12.79□□□□□ -0.36
CPSF1-203ENST00000527916 TRIM43Q96BQ3 446 aaPredicted RBP12.79□□□□□ -0.36
CPSF1-203ENST00000527916 KIAA1683Q9H0B3 1180 aa12.79□□□□□ -0.36
CPSF1-203ENST00000527916 CCDC8Q9H0W5 538 aaPredicted RBP12.79□□□□□ -0.36
CPSF1-203ENST00000527916 SNRKQ9NRH2 765 aa12.79□□□□□ -0.36
CPSF1-203ENST00000527916 SIPA1L1O43166 1804 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 FOCADQ5VW36 1801 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-203ENST00000527916 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.78□□□□□ -0.36
CPSF1-203ENST00000527916 HMMRO75330 724 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 CLTBP09497 229 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 RAG1P15918 1043 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 VCAM1P19320 739 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 DNAJB2P25686 324 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 ADORA2AP29274 412 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 PLA2G5P39877 138 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 ZAP70P43403 619 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 RAB3GAP1Q15042 981 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 LRRC41Q15345 812 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 ANO1Q5XXA6 986 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 RHPN1Q8TCX5 695 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 FAM122AQ96E09 287 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 ZNF576Q9H609 170 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 BTBD7Q9P203 1132 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 SAP30BPQ9UHR5 308 aaKnown RBP12.78□□□□□ -0.36
CPSF1-203ENST00000527916 EXOC6BQ9Y2D4 811 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 COG6Q9Y2V7 657 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 CDK5RAP2Q96SN8 1893 aa12.78□□□□□ -0.36
CPSF1-203ENST00000527916 IGHA2P01877 340 aa12.77□□□□□ -0.37
CPSF1-203ENST00000527916 FPGSQ05932 587 aa12.77□□□□□ -0.37
CPSF1-203ENST00000527916 CERS3Q8IU89 383 aa12.77□□□□□ -0.37
CPSF1-203ENST00000527916 SIRT2Q8IXJ6 389 aa12.77□□□□□ -0.37
CPSF1-203ENST00000527916 USP38Q8NB14 1042 aa12.77□□□□□ -0.37
CPSF1-203ENST00000527916 IL27Q8NEV9 243 aa12.77□□□□□ -0.37
CPSF1-203ENST00000527916 GAS2L1Q99501 681 aaPredicted RBP12.77□□□□□ -0.37
CPSF1-203ENST00000527916 RPAP3Q9H6T3 665 aaPredicted RBP12.77□□□□□ -0.37
CPSF1-203ENST00000527916 CABP5Q9NP86 173 aa12.77□□□□□ -0.37
CPSF1-203ENST00000527916 HOXC10Q9NYD6 342 aa12.77□□□□□ -0.37
CPSF1-203ENST00000527916 TLR7Q9NYK1 1049 aaKnown RBP12.77□□□□□ -0.37
CPSF1-203ENST00000527916 SPDYE16A6NNV3 312 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-203ENST00000527916 KIAA0355O15063 1070 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 RAB11FIP3O75154 756 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 ABCB5Q2M3G0 1257 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 TATDN1Q6P1N9 297 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 RNF180Q86T96 592 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 AACSQ86V21 672 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 CLASRPQ8N2M8 674 aaKnown RBP12.76□□□□□ -0.37
CPSF1-203ENST00000527916 SHCBP1Q8NEM2 672 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 TIFAQ96CG3 184 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 KIF1BPQ96EK5 621 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 PIH1D3Q9NQM4 214 aaKnown RBP12.76□□□□□ -0.37
CPSF1-203ENST00000527916 TMEM39AQ9NV64 488 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 THEGQ9P2T0 379 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 SERPINB13Q9UIV8 391 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 PHF24Q9UPV7 400 aa12.76□□□□□ -0.37
CPSF1-203ENST00000527916 PQBP1O60828 265 aaKnown RBP12.75□□□□□ -0.37
CPSF1-203ENST00000527916 RARBP10826 455 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 COG2Q14746 738 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 CHD9Q3L8U1 2897 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 CERKLQ49MI3 558 aaPredicted RBP12.75□□□□□ -0.37
CPSF1-203ENST00000527916 AKNAD1Q5T1N1 836 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 CCDC174Q6PII3 467 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.75□□□□□ -0.37
CPSF1-203ENST00000527916 PPM1EQ8WY54 764 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 ASB2Q96Q27 587 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 MOV10L1Q9BXT6 1211 aaKnown RBP12.75□□□□□ -0.37
CPSF1-203ENST00000527916 SPATC1LQ9H0A9 340 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 EHD4Q9H223 541 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 MROH8Q9H579 483 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 RAPGEFL1Q9UHV5 662 aa12.75□□□□□ -0.37
CPSF1-203ENST00000527916 SMCHD1A6NHR9 2005 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 ZNF236Q9UL36 1845 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 ERCC3P19447 782 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 CYP7A1P22680 504 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 ITGB8P26012 769 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 USP5P45974 858 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 EPHB4P54760 987 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 MRPS5P82675 430 aaKnown RBP12.74□□□□□ -0.37
CPSF1-203ENST00000527916 MAP3K12Q12852 859 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 TTF1Q15361 905 aaPredicted RBP12.74□□□□□ -0.37
CPSF1-203ENST00000527916 FAM47AQ5JRC9 791 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 PRAMEF19Q5SWL8 479 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 ADGRA1Q86SQ6 560 aa12.74□□□□□ -0.37
CPSF1-203ENST00000527916 TTC6Q86TZ1 520 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms